Gm6594 Pseudogene Detail

Summary

• Symbol
  Gm6594
• Name
  predicted pseudogene 6594

• Feature Type
  pseudogene
• IDs
  MGI:3643873
  NCBI Gene: 625514
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:82846689-82846974 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 51.91 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  165 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643873	pseudogene	Chr17:82846591-82847774 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0017731	protein coding gene	Chr10:116345283-116345661 (-)
A/J	MGP_AJ_G0024029	protein coding gene	Chr17:82880807-82881956 (+)
AKR/J	MGP_AKRJ_G0023998	protein coding gene	Chr17:84232894-84235583 (+)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0023795	protein coding gene	Chr17:85066214-85067042 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0024475	protein coding gene	Chr17:88656163-88656575 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0016289	protein coding gene	Chr11:45246743-45247095 (+)
CAST/EiJ	MGP_CASTEiJ_G0023274	protein coding gene	Chr17:85797505-85797910 (+)
CBA/J	MGP_CBAJ_G0023769	protein coding gene	Chr17:92317727-92318139 (+)
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0023981	protein coding gene	Chr17:86333828-86334244 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0024520	protein coding gene	Chr17:84729966-84730355 (+)
PWK/PhJ	MGP_PWKPhJ_G0015507	protein coding gene	Chr1:102896336-102896746 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0015292	protein coding gene	Chr1:106418134-106418616 (+)
WSB/EiJ	MGP_WSBEiJ_G0035247	protein coding gene	ChrX:137085696-137086082 (-)

Homology

• Gene Tree
  Gm6594
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000073371 (Evidence)
• NCBI Gene
  625514

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000073371	Ensembl Gene Model | MGI Sequence Detail	286	C57BL/6J
transcript	ENSMUST00000097278	Ensembl | MGI Sequence Detail	286	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;

TSS for Gm6594:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr5212	Chr17:82846586-82846600 (+)	-96 bp