Gm5205 Pseudogene Detail

Summary

• Symbol
  Gm5205
• Name
  predicted gene 5205

• Feature Type
  pseudogene
• IDs
  MGI:3643900
  NCBI Gene: 382876
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:40279195-40280197 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 22.34 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  152 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643900	pseudogene	Chr14:40279173-40280410 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011096	pseudogene	Chr14:34188615-34189617 (+)
A/J	MGP_AJ_G0011092	pseudogene	Chr14:32848357-32849359 (+)
AKR/J	MGP_AKRJ_G0011049	pseudogene	Chr14:34188476-34189478 (+)
BALB/cJ	MGP_BALBcJ_G0011069	pseudogene	Chr14:33057510-33058512 (+)
C3H/HeJ	MGP_C3HHeJ_G0010967	pseudogene	Chr14:34147257-34148259 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011351	pseudogene	Chr14:35529788-35530790 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009935	pseudogene	Chr14:32517963-32518970 (+)
CAST/EiJ	MGP_CASTEiJ_G0010782	pseudogene	Chr14:33938370-33939372 (+)
CBA/J	MGP_CBAJ_G0010940	pseudogene	Chr14:36763826-36764828 (+)
DBA/2J	MGP_DBA2J_G0010988	pseudogene	Chr14:32809300-32810302 (+)
FVB/NJ	MGP_FVBNJ_G0010997	pseudogene	Chr14:32745189-32746191 (+)
LP/J	MGP_LPJ_G0011073	pseudogene	Chr14:34387237-34388239 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010983	pseudogene	Chr14:36401378-36402380 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011334	pseudogene	Chr14:33974558-33975560 (+)
PWK/PhJ	MGP_PWKPhJ_G0010655	pseudogene	Chr14:32290419-32291421 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010477	pseudogene	Chr14:33608756-33609759 (+)
WSB/EiJ	MGP_WSBEiJ_G0010835	pseudogene	Chr14:34093497-34094499 (+)

Homology

• Gene Tree
  Gm5205
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000098169 (Evidence)
• NCBI Gene
  382876

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098169	Ensembl Gene Model | MGI Sequence Detail	1003	C57BL/6J
transcript	ENSMUST00000182253	Ensembl | MGI Sequence Detail	1003	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm5205:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125131	Chr14:40279125-40279127 (+)	-69 bp