Gm6180 Pseudogene Detail

Summary

• Symbol
  Gm6180
• Name
  predicted pseudogene 6180

• Feature Type
  pseudogene
• IDs
  MGI:3643972
  NCBI Gene: 620772
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr8:42699948-42700445 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 23.89 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  13 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643972	pseudogene	Chr8:42699873-42700832 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011913	pseudogene	Chr2:152389813-152390306 (-)
A/J	MGP_AJ_G0011906	pseudogene	Chr2:146195044-146195537 (-)
AKR/J	MGP_AKRJ_G0011871	pseudogene	Chr2:150429203-150429696 (-)
BALB/cJ	MGP_BALBcJ_G0011882	pseudogene	Chr2:146619986-146620479 (-)
C3H/HeJ	MGP_C3HHeJ_G0013874	pseudogene	Chr8:41133345-41133826 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014481	pseudogene	Chr8:42655804-42656620 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010662	pseudogene	Chr2:140216454-140216945 (-)
CAST/EiJ	MGP_CASTEiJ_G0011550	pseudogene	Chr2:151290117-151290610 (-)
CBA/J	MGP_CBAJ_G0011739	pseudogene	Chr2:162589074-162589567 (-)
DBA/2J	MGP_DBA2J_G0011792	pseudogene	Chr2:145456133-145456626 (-)
FVB/NJ	MGP_FVBNJ_G0011797	pseudogene	Chr2:143963782-143964275 (-)
LP/J	MGP_LPJ_G0011860	pseudogene	Chr2:152519894-152520387 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011799	pseudogene	Chr2:166651778-166652271 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012179	pseudogene	Chr2:150416284-150416777 (-)
PWK/PhJ	MGP_PWKPhJ_G0011400	pseudogene	Chr2:145147915-145148407 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011217	pseudogene	Chr2:149399112-149399597 (-)
WSB/EiJ	MGP_WSBEiJ_G0011571	pseudogene	Chr2:151368763-151369256 (-)

Homology

• Gene Tree
  Gm6180
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000053038 (Evidence)
• NCBI Gene
  620772

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000053038	Ensembl Gene Model | MGI Sequence Detail	498	C57BL/6J
transcript	ENSMUST00000065243	Ensembl | MGI Sequence Detail	498	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm6180:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr77101	Chr8:42699871-42699874 (+)	-75 bp
Tssr77102	Chr8:42700226-42700251 (+)	291 bp