Gm9419 Pseudogene Detail

Summary

• Symbol
  Gm9419
• Name
  predicted gene 9419

• Feature Type
  pseudogene
• IDs
  MGI:3643978
  NCBI Gene: 668890
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:144433645-144434211 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 69.05 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  129 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643978	pseudogene	Chr3:144433554-144435130 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012461	pseudogene	Chr3:148041402-148041968 (+)
A/J	MGP_AJ_G0012456	pseudogene	Chr3:142791567-142792133 (+)
AKR/J	MGP_AKRJ_G0012420	pseudogene	Chr3:146607220-146607786 (+)
BALB/cJ	MGP_BALBcJ_G0012439	pseudogene	Chr3:142627796-142628362 (+)
C3H/HeJ	MGP_C3HHeJ_G0012301	pseudogene	Chr3:146928847-146929413 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012753	pseudogene	Chr3:153129039-153129605 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012328	pseudogene	Chr8:64838862-64839380 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0012281	pseudogene	Chr3:158373513-158374079 (+)
DBA/2J	MGP_DBA2J_G0012333	pseudogene	Chr3:141956372-141956937 (+)
FVB/NJ	MGP_FVBNJ_G0012337	pseudogene	Chr3:139343167-139343733 (+)
LP/J	MGP_LPJ_G0012412	pseudogene	Chr3:149520241-149520807 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012343	pseudogene	Chr3:166724963-166725529 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012753	pseudogene	Chr3:146211823-146212389 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm9419
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm9419
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000106089 (Evidence)
• NCBI Gene
  668890

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106089	Ensembl Gene Model | MGI Sequence Detail	567	C57BL/6J
transcript	ENSMUST00000200672	Ensembl | MGI Sequence Detail	567	Not Applicable

References

• Summaries
  All 6

  Diseases 1

  Phenotypes 2
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm9419:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr32278	Chr3:144433552-144433570 (+)	-84 bp