Gm6155 Pseudogene Detail

Summary

• Symbol
  Gm6155
• Name
  predicted pseudogene 6155

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3643981
  NCBI Gene: 620480
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:84483747-84484087 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 48.37 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643981	pseudogene	Chr7:84483567-84490900 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013949	pseudogene	Chr7:87012747-87013087 (-)
A/J	MGP_AJ_G0013968	pseudogene	Chr7:84926639-84926978 (-)
AKR/J	MGP_AKRJ_G0013902	pseudogene	Chr7:86889656-86889931 (-)
BALB/cJ	MGP_BALBcJ_G0013925	pseudogene	Chr7:84593486-84593826 (-)
C3H/HeJ	MGP_C3HHeJ_G0013760	pseudogene	Chr7:87422601-87422876 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013419	pseudogene	Chr7:78418517-78418857 (-)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0013821	pseudogene	Chr7:83371249-83371589 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0013838	pseudogene	Chr7:87909487-87909826 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014318	pseudogene	Chr7:86261371-86261711 (-)
PWK/PhJ	MGP_PWKPhJ_G0013233	pseudogene	Chr7:76678896-76679284 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012997	pseudogene	Chr7:73253762-73254103 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm6155
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  24 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Radiation induced
  3
• Genomic Mutations
  4 involving Gm6155
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  2

• Ensembl
  ENSMUSG00000068629 (Evidence)
• NCBI Gene
  620480

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000068629	Ensembl Gene Model | MGI Sequence Detail	341	C57BL/6J
transcript	ENSMUST00000173735	Ensembl | MGI Sequence Detail	341	Not Applicable
polypeptide	XP_036009536	RefSeq | MGI Sequence Detail	155	C57BL/6J

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 29

  Phenotypes 24
• Earliest
  J:141526 Russell LB, et al., Analysis of the albino-locus region of the mouse. III. Time of death of prenatal lethals. Genetics. 1979 May;92(1):205-13
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

TSS for Gm6155:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr73451	Chr7:84484244-84484245 (-)	-158 bp