Gm9006 Pseudogene Detail

Summary

• Symbol
  Gm9006
• Name
  predicted gene 9006

• Feature Type
  pseudogene
• IDs
  MGI:3644004
  NCBI Gene: 108167974
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr12:107579259-107580099 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 58.18 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  163 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644004	pseudogene	Chr12:107579259-107580104 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010949	pseudogene	Chr12:109659569-109660414 (+)
A/J	MGP_AJ_G0010955	pseudogene	Chr12:105531209-105532045 (+)
AKR/J	MGP_AKRJ_G0010910	pseudogene	Chr12:108590362-108591203 (+)
BALB/cJ	MGP_BALBcJ_G0010928	pseudogene	Chr12:105941369-105942209 (+)
C3H/HeJ	MGP_C3HHeJ_G0010826	pseudogene	Chr12:109039772-109040613 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011201	pseudogene	Chr12:113011362-113012207 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009806	pseudogene	Chr12:102078789-102079540 (+)
CAST/EiJ	MGP_CASTEiJ_G0010657	pseudogene	Chr12:103924573-103925414 (+)
CBA/J	MGP_CBAJ_G0010799	pseudogene	Chr12:117536959-117537800 (+)
DBA/2J	MGP_DBA2J_G0010848	pseudogene	Chr12:105035968-105036808 (+)
FVB/NJ	MGP_FVBNJ_G0010861	pseudogene	Chr12:103827582-103828427 (+)
LP/J	MGP_LPJ_G0010932	pseudogene	Chr12:109524849-109525699 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010841	pseudogene	Chr12:120789854-120790695 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011187	pseudogene	Chr12:108030769-108031614 (+)
PWK/PhJ	MGP_PWKPhJ_G0010541	pseudogene	Chr12:99657725-99658570 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010359	pseudogene	Chr12:102253642-102254402 (+)
WSB/EiJ	MGP_WSBEiJ_G0010701	pseudogene	Chr12:108970246-108971091 (+)

Homology

• Gene Tree
  Gm9006
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000079359 (Evidence)
• NCBI Gene
  108167974

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000079359	Ensembl Gene Model | MGI Sequence Detail	841	C57BL/6J
transcript	ENSMUST00000165520	Ensembl | MGI Sequence Detail	841	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;