Gm6916 Pseudogene Detail

Summary

• Symbol
  Gm6916
• Name
  predicted pseudogene 6916

• Feature Type
  pseudogene
• IDs
  MGI:3644024
  NCBI Gene: 628781
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:127942191-127942385 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 70.13 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  113 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644024	pseudogene	Chr7:127942152-127942788 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039751	pseudogene	Chr7:132737996-132762199 (+)
A/J	MGP_AJ_G0039750	pseudogene	Chr7:129162696-129188537 (+)
AKR/J	MGP_AKRJ_G0039674	pseudogene	Chr7:132542142-132568840 (+)
BALB/cJ	MGP_BALBcJ_G0039718	pseudogene	Chr7:128829190-128855298 (+)
C3H/HeJ	MGP_C3HHeJ_G0039380	pseudogene	Chr7:132430534-132458475 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040281	pseudogene	Chr7:137911189-137944918 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036878	pseudogene	Chr5:27241868-27242062 (-)
CAST/EiJ	MGP_CASTEiJ_G0038498	pseudogene	Chr7:124216842-124243291 (+)
CBA/J	MGP_CBAJ_G0039352	pseudogene	Chr7:142619972-142654065 (+)
DBA/2J	MGP_DBA2J_G0039546	pseudogene	Chr7:127152615-127176861 (+)
FVB/NJ	MGP_FVBNJ_G0039504	pseudogene	Chr7:127019754-127045999 (+)
LP/J	MGP_LPJ_G0039586	pseudogene	Chr7:134212586-134242573 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039505	pseudogene	Chr7:143644423-143671835 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040384	pseudogene	Chr7:131506264-131535898 (+)
PWK/PhJ	MGP_PWKPhJ_G0038174	pseudogene	Chr7:120164729-120191827 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037856	pseudogene	Chr17:33413438-33413632 (-)
WSB/EiJ	MGP_WSBEiJ_G0038733	pseudogene	Chr7:132482994-132511647 (+)

Homology

• Gene Tree
  Gm6916
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000108608 (Evidence)
• NCBI Gene
  628781

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108608	Ensembl Gene Model | MGI Sequence Detail	195	C57BL/6J
transcript	ENSMUST00000205523	Ensembl | MGI Sequence Detail	195	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm6916:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr69420	Chr7:127942137-127942170 (+)	-37 bp