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Gm6116 Gene Detail
Summary
  • Symbol
    Gm6116
  • Name
    predicted gene 6116
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3644088
    NCBI Gene: 619945
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr5:75109855-75127029 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 39.54 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    642 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3644088
 lncRNA gene Chr5:75109851-75127029 (+)
129S1/SvImJ MGP_129S1SvImJ_G0006670
 lincRNA gene Chr5:75057714-75075607 (+)
A/J MGP_AJ_G0006664
 lincRNA gene Chr5:72200140-72220746 (+)
AKR/J MGP_AKRJ_G0006634
 lincRNA gene Chr5:74560554-74578817 (+)
BALB/cJ MGP_BALBcJ_G0006639
 lincRNA gene Chr5:72913877-72931305 (+)
C3H/HeJ MGP_C3HHeJ_G0006585
 lincRNA gene Chr5:74941488-74959516 (+)
C57BL/6NJ MGP_C57BL6NJ_G0006804
 lincRNA gene Chr5:78086946-78106241 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0006063
 lincRNA gene Chr5:67880180-67897079 (+)
CAST/EiJ MGP_CASTEiJ_G0006508
 lincRNA gene Chr5:74057135-74074657 (+)
CBA/J MGP_CBAJ_G0006566
 lincRNA gene Chr5:80667229-80686294 (+)
DBA/2J MGP_DBA2J_G0006586
 lincRNA gene Chr5:72286127-72303226 (+)
FVB/NJ MGP_FVBNJ_G0006611
 lincRNA gene Chr5:71435182-71454035 (+)
LP/J MGP_LPJ_G0006671
 lincRNA gene Chr5:75484077-75500976 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0006595
 lincRNA gene Chr5:83879841-83900073 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0006806
 lincRNA gene Chr5:74091422-74110021 (+)
PWK/PhJ MGP_PWKPhJ_G0006447
 lincRNA gene Chr5:71275549-71294977 (+)
SPRET/EiJ MGP_SPRETEiJ_G0006354
 lincRNA gene Chr5:73447918-73467632 (+)
WSB/EiJ MGP_WSBEiJ_G0006559
 lincRNA gene Chr5:74384363-74401219 (+)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    358 phenotype references
  • All Mutations and Alleles
    7
  • Chemically induced (other)
    2
  • Radiation induced
    1
  • Spontaneous
    3
  • Targeted
    1
  • Genomic Mutations
    6 involving Gm6116
  • Find Mice (IMSR)
    1 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    25
  • RefSeq
    2
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 619945 NCBI Gene Model | MGI Sequence Detail 17175 C57BL/6J ±  kb
transcript NR_045866 RefSeq | MGI Sequence Detail 1433 C57BL/6  
polypeptide Q3UNM3 UniProt | EBI | MGI Sequence Detail 126 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 366
    Diseases 1
    Phenotypes 358
  • Earliest
    J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
  • Latest
    J:353367 Taketomi Y, et al., Lipid-orchestrated paracrine circuit coordinates mast cell maturation and anaphylaxis through functional interaction with fibroblasts. Immunity. 2024 Aug 13;57(8):1828-1847.e11
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory