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Kdm4dl Pseudogene Detail
Summary
  • Symbol
    Kdm4dl
  • Name
    lysine (K)-specific demethylase 4D-like
  • Synonyms
    Gm27205, Gm6017
  • Feature Type
    pseudogene
  • IDs
    MGI:3644125
    NCBI Gene: 547035
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr9:14362311-14363318 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 4.04 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    90 from dbSNP Build 142
  • Strain Annotations
    12
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3644125
 pseudogene Chr9:14362132-14363318 (-)
129S1/SvImJ no annotation
A/J MGP_AJ_G0014139
 pseudogene Chr9:11342952-11344017 (-)
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ MGP_C3HHeJ_G0013920
 pseudogene Chr9:11643941-11645006 (-)
C57BL/6NJ MGP_C57BL6NJ_G0014532
 pseudogene Chr9:11754028-11755103 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0012365
 pseudogene Chr9:10644892-10645957 (-)
CAST/EiJ MGP_CASTEiJ_G0011997
 pseudogene Chr3:123125130-123126066 (-)
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0013983
 pseudogene Chr9:10819909-10821321 (-)
LP/J MGP_LPJ_G0014063
 pseudogene Chr9:11472453-11491317 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0014011
 pseudogene Chr9:13367767-13371624 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0014503
 pseudogene Chr9:11368001-11370450 (-)
PWK/PhJ MGP_PWKPhJ_G0011839
 pseudogene Chr3:119120720-119121656 (-)
SPRET/EiJ MGP_SPRETEiJ_G0011656
 pseudogene Chr3:120982970-120983894 (-)
WSB/EiJ no annotation



Homology
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    16
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 547035 NCBI Gene Model | MGI Sequence Detail 1008 C57BL/6J ±  kb
For the selected sequence
Other
Accession IDs
less
MGI:5521048
References
more
  • Summaries
    All 8
    Gene Ontology 2
  • Earliest
    J:196057 Jack AP, et al., H3K56me3 is a novel, conserved heterochromatic mark that largely but not completely overlaps with H3K9me3 in both regulation and localization. PLoS One. 2013;8(2):e51765
  • Latest
    J:293373 Qiao Y, et al., High-resolution annotation of the mouse preimplantation embryo transcriptome using long-read sequencing. Nat Commun. 2020 May 27;11(1):2653
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory