Gm5828 Pseudogene Detail

Summary

• Symbol
  Gm5828
• Name
  predicted gene 5828

• Feature Type
  pseudogene
• IDs
  MGI:3644176
  NCBI Gene: 545306
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:16838503-16840362 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 5.11 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  244 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644176	pseudogene	Chr1:16838503-16840362 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010011	pseudogene	Chr1:14294484-14296343 (-)
A/J	MGP_AJ_G0009992	pseudogene	Chr1:14102031-14103890 (-)
AKR/J	MGP_AKRJ_G0009975	pseudogene	Chr1:14125559-14127418 (-)
BALB/cJ	MGP_BALBcJ_G0009981	pseudogene	Chr1:13827191-13829050 (-)
C3H/HeJ	MGP_C3HHeJ_G0009912	pseudogene	Chr1:14153411-14155621 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010230	pseudogene	Chr1:14912934-14915726 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009944	pseudogene	Chr14:44302849-44316308 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0009886	pseudogene	Chr1:15248738-15250597 (-)
DBA/2J	MGP_DBA2J_G0009908	pseudogene	Chr1:13703633-13706408 (-)
FVB/NJ	MGP_FVBNJ_G0009934	pseudogene	Chr1:13476742-13478601 (-)
LP/J	MGP_LPJ_G0010002	pseudogene	Chr1:14493254-14495093 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0009894	pseudogene	Chr1:15862121-15876205 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010205	pseudogene	Chr1:14084262-14086121 (-)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0009483	pseudogene	Chr1:14284678-14286456 (-)
WSB/EiJ	MGP_WSBEiJ_G0009822	pseudogene	Chr1:14019571-14028851 (-)

Homology

• Gene Tree
  Gm5828
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  16 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000091020 (Evidence)
• NCBI Gene
  545306

Representative Sequences			Length	Strain/Species
genomic	545306	NCBI Gene Model | MGI Sequence Detail	1860	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm5828:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11055	Chr1:16840373-16840383 (-)	-16 bp