Gm5445 Pseudogene Detail

Summary

• Symbol
  Gm5445
• Name
  predicted gene 5445

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3644181
  NCBI Gene: 432725
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr13:12393039-12393518 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 4.56 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644181	pseudogene	Chr13:12393039-12393521 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010969	pseudogene	Chr13:9137355-9137813 (+)
A/J	MGP_AJ_G0010973	pseudogene	Chr13:8964187-8964643 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0010946	pseudogene	Chr13:8950037-8950493 (+)
C3H/HeJ	MGP_C3HHeJ_G0010846	pseudogene	Chr13:9294966-9295401 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011229	pseudogene	Chr13:9560736-9561240 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0010818	pseudogene	Chr13:9814839-9815277 (+)
DBA/2J	MGP_DBA2J_G0010865	pseudogene	Chr13:8784266-8784913 (+)
FVB/NJ	MGP_FVBNJ_G0010877	pseudogene	Chr13:8599182-8599633 (+)
LP/J	MGP_LPJ_G0010951	pseudogene	Chr13:9235936-9236408 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010862	pseudogene	Chr13:10101924-10102375 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011208	pseudogene	Chr13:9059162-9059644 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm5445
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  2

• Ensembl
  ENSMUSG00000094185 (Evidence)
• NCBI Gene
  432725

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000094185	Ensembl Gene Model | MGI Sequence Detail	480	C57BL/6J
transcript	ENSMUST00000180224	Ensembl | MGI Sequence Detail	480	Not Applicable
polypeptide	XP_036014184	RefSeq | MGI Sequence Detail	160	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;