Gm5444 Gene Detail

Summary

• Symbol
  Gm5444
• Name
  predicted gene 5444

• Feature Type
  lncRNA gene
• IDs
  MGI:3644242
  NCBI Gene: 432723
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr13:4821650-4886484 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 2.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1708 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644242	lncRNA gene	Chr13:4821650-4886484 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0020211	protein coding gene	Chr13:1278544-1352230 (+)
A/J	MGP_AJ_G0020167	protein coding gene	Chr13:1360876-1424123 (+)
AKR/J	MGP_AKRJ_G0020142	protein coding gene	Chr13:1422567-1483197 (+)
BALB/cJ	MGP_BALBcJ_G0020150	protein coding gene	Chr13:1369453-1432135 (+)
C3H/HeJ	MGP_C3HHeJ_G0019954	protein coding gene	Chr13:1480667-1544683 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0020597	protein coding gene	Chr13:1400385-1466132 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0018207	protein coding gene	Chr13:1413188-1470345 (+)
CAST/EiJ	MGP_CASTEiJ_G0019494	protein coding gene	Chr13:1302564-1368290 (+)
CBA/J	MGP_CBAJ_G0019921	protein coding gene	Chr13:1403029-1477028 (+)
DBA/2J	MGP_DBA2J_G0020038	protein coding gene	Chr13:1274704-1337741 (+)
FVB/NJ	MGP_FVBNJ_G0020023	protein coding gene	Chr13:1222974-1279810 (+)
LP/J	MGP_LPJ_G0020112	protein coding gene	Chr13:1380644-1441621 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0020059	protein coding gene	Chr13:1561714-1654179 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0020625	protein coding gene	Chr13:1358757-1417672 (+)
PWK/PhJ	MGP_PWKPhJ_G0019255	protein coding gene	Chr13:1357896-1421228 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0019062	protein coding gene	Chr13:1418126-1482203 (+)
WSB/EiJ	MGP_WSBEiJ_G0019552	protein coding gene	Chr13:1303929-1372999 (+)

Homology

• Gene Tree
  Gm5444
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  2
• Targeted
  1
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  10 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000053499 (Evidence)
• NCBI Gene
  432723

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000053499	Ensembl Gene Model | MGI Sequence Detail	64835	C57BL/6J
transcript	ENSMUST00000065956	Ensembl | MGI Sequence Detail	2468	Not Applicable
polypeptide	Q8CDE5	UniProt | EBI | MGI Sequence Detail	116	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:157065 Helmholtz Zentrum Muenchen GmbH, Alleles produced for the EUCOMM and EUCOMMTools projects by the Helmholtz Zentrum Muenchen GmbH (Hmgu). MGI Direct Data Submission. 2010-2015;