Gm5345 Pseudogene Detail

Summary

• Symbol
  Gm5345
• Name
  predicted gene 5345

• Feature Type
  pseudogene
• IDs
  MGI:3644320
  NCBI Gene: 384808
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr8:41306865-41308064 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 23.89 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  128 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644320	pseudogene	Chr8:41306662-41308082 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014069	pseudogene	Chr8:39671828-39674830 (-)
A/J	MGP_AJ_G0014087	pseudogene	Chr8:38162563-38164586 (-)
AKR/J	MGP_AKRJ_G0014016	pseudogene	Chr8:39314547-39318937 (-)
BALB/cJ	MGP_BALBcJ_G0014040	pseudogene	Chr8:38284944-38287496 (-)
C3H/HeJ	MGP_C3HHeJ_G0013871	pseudogene	Chr8:39687511-39689992 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0014478	pseudogene	Chr8:41194850-41196049 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012314	pseudogene	Chr8:34830703-34831914 (-)
CAST/EiJ	MGP_CASTEiJ_G0013527	pseudogene	Chr8:39199298-39203323 (-)
CBA/J	MGP_CBAJ_G0013853	pseudogene	Chr8:42893584-42897967 (-)
DBA/2J	MGP_DBA2J_G0013932	pseudogene	Chr8:38001281-38004239 (-)
FVB/NJ	MGP_FVBNJ_G0013934	pseudogene	Chr8:37585644-37588532 (-)
LP/J	MGP_LPJ_G0014018	pseudogene	Chr8:39712119-39718098 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013960	pseudogene	Chr8:42654852-42657136 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014452	pseudogene	Chr8:39468287-39469716 (-)
PWK/PhJ	MGP_PWKPhJ_G0013340	pseudogene	Chr8:37544982-37546304 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013119	pseudogene	Chr8:38642943-38644134 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm5345
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000098050 (Evidence)
• NCBI Gene
  384808

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098050	Ensembl Gene Model | MGI Sequence Detail	1200	C57BL/6J
transcript	ENSMUST00000183076	Ensembl | MGI Sequence Detail	1014	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm5345:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr81065	Chr8:41308590-41308594 (-)	-528 bp
Tssr81064	Chr8:41308132-41308139 (-)	-72 bp