Rpl19-ps10 Pseudogene Detail

Summary

• Symbol
  Rpl19-ps10
• Name
  ribosomal protein L19, pseudogene 10
• Synonyms
  Gm9188

• Feature Type
  pseudogene
• IDs
  MGI:3644393
  NCBI Gene: 668472
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:114771291-114771620 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 60.81 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  125 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644393	pseudogene	Chr7:114771226-114771925 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013993	pseudogene	Chr7:118875179-118875518 (+)
A/J	MGP_AJ_G0014013	pseudogene	Chr7:115882789-115883118 (+)
AKR/J	MGP_AKRJ_G0013946	pseudogene	Chr7:118812557-118812886 (+)
BALB/cJ	MGP_BALBcJ_G0013969	pseudogene	Chr7:115585225-115585564 (+)
C3H/HeJ	MGP_C3HHeJ_G0013805	pseudogene	Chr7:118762981-118763320 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014401	pseudogene	Chr7:123648161-123648490 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012246	pseudogene	Chr7:117401560-117401906 (+)
CAST/EiJ	MGP_CASTEiJ_G0013461	pseudogene	Chr7:110425823-110426183 (+)
CBA/J	MGP_CBAJ_G0013785	pseudogene	Chr7:127761066-127761405 (+)
DBA/2J	MGP_DBA2J_G0013861	pseudogene	Chr7:113946054-113946393 (+)
FVB/NJ	MGP_FVBNJ_G0013862	pseudogene	Chr7:113781025-113781358 (+)
LP/J	MGP_LPJ_G0013939	pseudogene	Chr7:120358376-120358715 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013888	pseudogene	Chr7:129355164-129355497 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014367	pseudogene	Chr7:117799852-117800181 (+)
PWK/PhJ	MGP_PWKPhJ_G0013275	pseudogene	Chr7:106815005-106815344 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013041	pseudogene	Chr7:104534007-104534346 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Rpl19-ps10
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Rpl19-ps10
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000108401 (Evidence)
• NCBI Gene
  668472

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108401	Ensembl Gene Model | MGI Sequence Detail	330	C57BL/6J
transcript	ENSMUST00000205555	Ensembl | MGI Sequence Detail	330	Not Applicable

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:61682 Hagiwara N, et al., Sox6 is a candidate gene for p100H myopathy, heart block, and sudden neonatal death. Proc Natl Acad Sci U S A. 2000 Apr 11;97(8):4180-5
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

TSS for Rpl19-ps10:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr68683	Chr7:114771223-114771238 (+)	-60 bp