Gm5093 Pseudogene Detail

Summary

• Symbol
  Gm5093
• Name
  predicted gene 5093

• Feature Type
  pseudogene
• IDs
  MGI:3644404
  NCBI Gene: 328825
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:46750504-46751023 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 22.90 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  99 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644404	pseudogene	Chr17:46750461-46751041 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0023816	protein coding gene	Chr17:47490699-47491226 (-)
A/J	MGP_AJ_G0023774	protein coding gene	Chr17:46359815-46360336 (-)
AKR/J	MGP_AKRJ_G0023745	protein coding gene	Chr17:46702263-46702784 (-)
BALB/cJ	MGP_BALBcJ_G0023778	protein coding gene	Chr17:46259313-46259834 (-)
C3H/HeJ	MGP_C3HHeJ_G0023903	protein coding gene	Chr18:13154313-13154759 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0024221	protein coding gene	Chr17:49551568-49552089 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0023023	protein coding gene	Chr17:47520183-47520716 (-)
CBA/J	MGP_CBAJ_G0023518	protein coding gene	Chr17:51326581-51328936 (-)
DBA/2J	MGP_DBA2J_G0023644	protein coding gene	Chr17:45140628-45141149 (-)
FVB/NJ	MGP_FVBNJ_G0023611	protein coding gene	Chr17:44753600-44754121 (-)
LP/J	MGP_LPJ_G0023725	protein coding gene	Chr17:48181195-48181716 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0023640	protein coding gene	Chr17:50885793-50886314 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0024266	protein coding gene	Chr17:47054759-47055280 (-)
PWK/PhJ	MGP_PWKPhJ_G0022768	protein coding gene	Chr17:44475557-44476677 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0022583	protein coding gene	Chr17:43928472-43929004 (-)
WSB/EiJ	MGP_WSBEiJ_G0023088	protein coding gene	Chr17:47598258-47601078 (-)

Homology

• Gene Tree
  Gm5093
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  9 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000091742 (Evidence)
• NCBI Gene
  328825

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091742	Ensembl Gene Model | MGI Sequence Detail	520	C57BL/6J
transcript	ENSMUST00000166852	Ensembl | MGI Sequence Detail	520	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm5093:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr148325	Chr17:46751042-46751051 (-)	-24 bp