Gm5386 Pseudogene Detail

Summary

• Symbol
  Gm5386
• Name
  predicted pseudogene 5386

• Feature Type
  pseudogene
• IDs
  MGI:3644449
  NCBI Gene: 385346
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:44635808-44638257 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 24.27 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  148 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644449	pseudogene	ChrX:44635808-44639942 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014402	pseudogene	ChrX:40643356-40645805 (-)
A/J	MGP_AJ_G0014408	pseudogene	ChrX:40555422-40557871 (-)
AKR/J	MGP_AKRJ_G0014335	pseudogene	ChrX:41592927-41595376 (-)
BALB/cJ	MGP_BALBcJ_G0014361	pseudogene	ChrX:40267942-40270391 (-)
C3H/HeJ	MGP_C3HHeJ_G0014193	pseudogene	ChrX:40959469-40961918 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0014818	pseudogene	ChrX:41599064-41601513 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012604	pseudogene	ChrX:38373210-38375643 (-)
CAST/EiJ	MGP_CASTEiJ_G0013834	pseudogene	ChrX:28615927-28618376 (-)
CBA/J	MGP_CBAJ_G0014178	pseudogene	ChrX:42757691-42760140 (-)
DBA/2J	MGP_DBA2J_G0014257	pseudogene	ChrX:40366041-40368490 (-)
FVB/NJ	MGP_FVBNJ_G0014258	pseudogene	ChrX:40147606-40150055 (-)
LP/J	MGP_LPJ_G0014355	pseudogene	ChrX:40937437-40939886 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014291	pseudogene	ChrX:43977846-43980295 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014793	pseudogene	ChrX:40589457-40591907 (-)
PWK/PhJ	MGP_PWKPhJ_G0013648	pseudogene	ChrX:28132993-28135442 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013444	pseudogene	ChrX:29287728-29290140 (-)
WSB/EiJ	MGP_WSBEiJ_G0013900	pseudogene	ChrX:40176466-40178915 (-)

Homology

• Gene Tree
  Gm5386
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000082886 (Evidence)
• NCBI Gene
  385346

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082886	Ensembl Gene Model | MGI Sequence Detail	2450	C57BL/6J
transcript	ENSMUST00000121749	Ensembl | MGI Sequence Detail	2450	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;