Gm6368 Pseudogene Detail

Summary

• Symbol
  Gm6368
• Name
  predicted gene 6368

• Feature Type
  pseudogene
• IDs
  MGI:3644537
  NCBI Gene: 622901
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  ChrX:140763171-140765317 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 62.74 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644537	pseudogene	ChrX:140763076-140765514 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014879	pseudogene	ChrX:139477960-139480106 (+)
A/J	MGP_AJ_G0014872	pseudogene	ChrX:138879824-138881970 (+)
AKR/J	MGP_AKRJ_G0014814	pseudogene	ChrX:143312740-143314886 (+)
BALB/cJ	MGP_BALBcJ_G0014828	pseudogene	ChrX:137115262-137117408 (+)
C3H/HeJ	MGP_C3HHeJ_G0014664	pseudogene	ChrX:139589986-139592132 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015312	pseudogene	ChrX:143490503-143492649 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009759	pseudogene	Chr12:32065333-32067487 (+)
CAST/EiJ	MGP_CASTEiJ_G0014277	pseudogene	ChrX:120308991-120311136 (+)
CBA/J	MGP_CBAJ_G0014653	pseudogene	ChrX:147966834-147968980 (+)
DBA/2J	MGP_DBA2J_G0014736	pseudogene	ChrX:137945658-137947804 (+)
FVB/NJ	MGP_FVBNJ_G0014719	pseudogene	ChrX:137169183-137171329 (+)
LP/J	MGP_LPJ_G0014833	pseudogene	ChrX:140431176-140433322 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014763	pseudogene	ChrX:155583428-155585574 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015297	pseudogene	ChrX:138787089-138789235 (+)
PWK/PhJ	MGP_PWKPhJ_G0014078	pseudogene	ChrX:117130527-117132673 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013861	pseudogene	ChrX:120818217-120820372 (+)
WSB/EiJ	MGP_WSBEiJ_G0014357	pseudogene	ChrX:137194478-137196624 (+)

Homology

• Gene Tree
  Gm6368
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000080775 (Evidence)
• NCBI Gene
  622901

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080775	Ensembl Gene Model | MGI Sequence Detail	2147	C57BL/6J
transcript	ENSMUST00000119727	Ensembl | MGI Sequence Detail	2147	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm6368:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr162228	ChrX:140763067-140763076 (+)	-99 bp
Tssr162229	ChrX:140763276-140763302 (+)	118 bp
Tssr5694	ChrX:140763768-140763789 (+)	608 bp
Tssr162230	ChrX:140764574-140764593 (+)	1,413 bp