Gm16418 Pseudogene Detail

Summary

• Symbol
  Gm16418
• Name
  predicted pseudogene 16418

• Feature Type
  pseudogene
• IDs
  MGI:3644548
  NCBI Gene: 100040287
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:166259274-166259444 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 73.79 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  114 from dbSNP Build 142
• Strain Annotations
  9

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644548	pseudogene	Chr1:166259085-166259468 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010428	pseudogene	Chr1:171951611-171951781 (-)
A/J	MGP_AJ_G0010418	pseudogene	Chr1:164953585-164953755 (-)
AKR/J	MGP_AKRJ_G0010386	pseudogene	Chr1:169926191-169926361 (-)
BALB/cJ	MGP_BALBcJ_G0010393	pseudogene	Chr1:165423916-165424086 (-)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0010666	pseudogene	Chr1:177702781-177702951 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0010411	pseudogene	Chr1:173034799-173034969 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010308	pseudogene	Chr1:191468594-191468764 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010631	pseudogene	Chr1:169792332-169792502 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm16418
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm16418
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13
• RefSeq
  1

• Ensembl
  ENSMUSG00000084093 (Evidence)
• NCBI Gene
  100040287

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084093	Ensembl Gene Model | MGI Sequence Detail	171	C57BL/6J
transcript	ENSMUST00000118577	Ensembl | MGI Sequence Detail	171	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;