Pced1c-ps Pseudogene Detail

Summary

• Symbol
  Pced1c-ps
• Name
  PC-esterase domain containing 1C, pseudogene

• Feature Type
  pseudogene
• IDs
  MGI:3644590
  NCBI Gene: 241084
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:69416480-69417230 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 34.82 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  108 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644590	pseudogene	Chr1:69416457-69417683 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010195	pseudogene	Chr1:69725085-69725835 (+)
A/J	MGP_AJ_G0010188	pseudogene	Chr1:67275153-67275903 (+)
AKR/J	MGP_AKRJ_G0010162	pseudogene	Chr1:69205002-69205752 (+)
BALB/cJ	MGP_BALBcJ_G0010167	pseudogene	Chr1:67372576-67373326 (+)
C3H/HeJ	MGP_C3HHeJ_G0010104	pseudogene	Chr1:69523614-69524364 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010421	pseudogene	Chr1:72408861-72409611 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009160	pseudogene	Chr1:63027557-63028307 (+)
CAST/EiJ	MGP_CASTEiJ_G0009934	pseudogene	Chr1:68741612-68742362 (+)
CBA/J	MGP_CBAJ_G0010072	pseudogene	Chr1:74823698-74824448 (+)
DBA/2J	MGP_DBA2J_G0010099	pseudogene	Chr1:66658307-66659057 (+)
FVB/NJ	MGP_FVBNJ_G0010121	pseudogene	Chr1:65857081-65857831 (+)
LP/J	MGP_LPJ_G0010184	pseudogene	Chr1:70791780-70792530 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010081	pseudogene	Chr1:78197670-78198420 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010399	pseudogene	Chr1:69173568-69174318 (+)
PWK/PhJ	MGP_PWKPhJ_G0009836	pseudogene	Chr1:66048889-66049639 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009649	pseudogene	Chr1:68548294-68549044 (+)
WSB/EiJ	MGP_WSBEiJ_G0009998	pseudogene	Chr1:68963418-68964168 (+)

Homology

• Gene Tree
  Pced1c-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Pced1c-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000101387 (Evidence)
• NCBI Gene
  241084

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101387	Ensembl Gene Model | MGI Sequence Detail	751	C57BL/6J
transcript	ENSMUST00000187740	Ensembl | MGI Sequence Detail	751	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582