Gm5260 Pseudogene Detail

Summary

• Symbol
  Gm5260
• Name
  predicted gene 5260

• Feature Type
  pseudogene
• IDs
  MGI:3644614
  NCBI Gene: 383546
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:104440726-104441491 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 49.35 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  140 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644614	pseudogene	Chr1:104440726-104441793 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010269	pseudogene	Chr1:106591600-106592667 (+)
A/J	MGP_AJ_G0010263	pseudogene	Chr1:102881159-102882226 (+)
AKR/J	MGP_AKRJ_G0010233	pseudogene	Chr1:105669406-105670473 (+)
BALB/cJ	MGP_BALBcJ_G0010238	pseudogene	Chr1:102969731-102970798 (+)
C3H/HeJ	MGP_C3HHeJ_G0010177	pseudogene	Chr1:106113159-106114226 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010510	pseudogene	Chr1:110743993-110745060 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0010000	pseudogene	Chr1:105033384-105034451 (+)
CBA/J	MGP_CBAJ_G0010146	pseudogene	Chr1:114439780-114440847 (+)
DBA/2J	MGP_DBA2J_G0010177	pseudogene	Chr1:101931015-101932082 (+)
FVB/NJ	MGP_FVBNJ_G0010196	pseudogene	Chr1:100915938-100917005 (+)
LP/J	MGP_LPJ_G0010257	pseudogene	Chr1:107852931-107853998 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010155	pseudogene	Chr1:118908745-118909812 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010475	pseudogene	Chr1:105768935-105770002 (+)
PWK/PhJ	MGP_PWKPhJ_G0009903	pseudogene	Chr1:101006261-101007328 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009718	pseudogene	Chr1:104449611-104450683 (+)
WSB/EiJ	MGP_WSBEiJ_G0010064	pseudogene	Chr1:105605871-105606938 (+)

Homology

• Gene Tree
  Gm5260
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm5260
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000099464 (Evidence)
• NCBI Gene
  383546

Representative Sequences			Length	Strain/Species
genomic	383546	NCBI Gene Model | MGI Sequence Detail	766	C57BL/6J

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45