Gm6142 Pseudogene Detail

Summary

• Symbol
  Gm6142
• Name
  predicted pseudogene 6142
• Synonyms
  Tbca16

• Feature Type
  pseudogene
• IDs
  MGI:3644670
  NCBI Gene: 620313
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr16:4138220-4138544 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 2.43 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644670	pseudogene	Chr16:4138045-4138574 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011224	pseudogene	Chr16:794678-795002 (-)
A/J	MGP_AJ_G0011213	pseudogene	Chr16:653140-653464 (-)
AKR/J	MGP_AKRJ_G0011175	pseudogene	Chr16:804389-804713 (-)
BALB/cJ	MGP_BALBcJ_G0011182	pseudogene	Chr16:794666-794990 (-)
C3H/HeJ	MGP_C3HHeJ_G0011081	pseudogene	Chr16:840765-841089 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0011477	pseudogene	Chr16:853181-853505 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012259	pseudogene	Chr7:124963098-124963423 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0011060	pseudogene	Chr16:932518-932842 (-)
DBA/2J	MGP_DBA2J_G0011108	pseudogene	Chr16:756047-756371 (-)
FVB/NJ	MGP_FVBNJ_G0011109	pseudogene	Chr16:731617-731941 (-)
LP/J	MGP_LPJ_G0011199	pseudogene	Chr16:798688-799012 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011103	pseudogene	Chr16:800085-800409 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011455	pseudogene	Chr16:780990-781314 (-)
PWK/PhJ	MGP_PWKPhJ_G0010779	pseudogene	Chr16:810241-810847 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0010603	pseudogene	Chr16:876113-876437 (-)
WSB/EiJ	MGP_WSBEiJ_G0010951	pseudogene	Chr16:803471-803795 (-)

Homology

• Gene Tree
  Gm6142
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000084304 (Evidence)
• NCBI Gene
  620313

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084304	Ensembl Gene Model | MGI Sequence Detail	325	C57BL/6J
transcript	ENSMUST00000120290	Ensembl | MGI Sequence Detail	325	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:189827 Nolasco S, et al., The expression of tubulin cofactor A (TBCA) is regulated by a noncoding antisense Tbca RNA during testis maturation. PLoS One. 2012;7(8):e42536

TSS for Gm6142:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr139764	Chr16:4138574-4138575 (-)	-31 bp
Tssr139763	Chr16:4138516-4138527 (-)	22 bp