Rpl26-ps4 Pseudogene Detail

Summary

• Symbol
  Rpl26-ps4
• Name
  ribosomal protein L26, pseudogene 4
• Synonyms
  Gm5489, Rpl26l1

• Feature Type
  pseudogene
• IDs
  MGI:3644695
  NCBI Gene: 433050
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:17529532-17529969 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 10.98 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  65 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644695	pseudogene	Chr16:17529491-17530010 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011248	pseudogene	Chr16:14884873-14885310 (+)
A/J	MGP_AJ_G0011232	pseudogene	Chr16:14144801-14145238 (+)
AKR/J	MGP_AKRJ_G0011195	pseudogene	Chr16:14690278-14690715 (+)
BALB/cJ	MGP_BALBcJ_G0011202	pseudogene	Chr16:14300082-14300519 (+)
C3H/HeJ	MGP_C3HHeJ_G0011100	pseudogene	Chr16:14843047-14843484 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011496	pseudogene	Chr16:15116312-15116749 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010080	pseudogene	Chr16:14203093-14203520 (+)
CAST/EiJ	MGP_CASTEiJ_G0010924	pseudogene	Chr16:14762996-14763433 (+)
CBA/J	MGP_CBAJ_G0011080	pseudogene	Chr16:15788199-15788636 (+)
DBA/2J	MGP_DBA2J_G0011127	pseudogene	Chr16:14059886-14060323 (+)
FVB/NJ	MGP_FVBNJ_G0011131	pseudogene	Chr16:14102206-14102643 (+)
LP/J	MGP_LPJ_G0011223	pseudogene	Chr16:14637176-14637613 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011125	pseudogene	Chr16:15480134-15480571 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011478	pseudogene	Chr16:14641875-14642312 (+)
PWK/PhJ	MGP_PWKPhJ_G0010800	pseudogene	Chr16:14317003-14317440 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010625	pseudogene	Chr16:14611593-14612030 (+)
WSB/EiJ	MGP_WSBEiJ_G0010972	pseudogene	Chr16:14628237-14628674 (+)

Homology

• Gene Tree
  Rpl26-ps4
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000059150 (Evidence)
• NCBI Gene
  433050

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000059150	Ensembl Gene Model | MGI Sequence Detail	438	C57BL/6J
transcript	ENSMUST00000170279	Ensembl | MGI Sequence Detail	438	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Rpl26-ps4:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr137327	Chr16:17529487-17529515 (+)	-31 bp