Gm8163 Pseudogene Detail

Summary

• Symbol
  Gm8163
• Name
  predicted gene 8163

• Feature Type
  pseudogene
• IDs
  MGI:3644711
  NCBI Gene: 666559
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:59769995-59771054 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 33.50 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  37 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644711	pseudogene	ChrX:59769940-59771129 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014452	pseudogene	ChrX:56103740-56104799 (-)
A/J	MGP_AJ_G0014461	pseudogene	ChrX:56290965-56292024 (-)
AKR/J	MGP_AKRJ_G0014393	pseudogene	ChrX:57825731-57826790 (-)
BALB/cJ	MGP_BALBcJ_G0014418	pseudogene	ChrX:55668354-55669413 (-)
C3H/HeJ	MGP_C3HHeJ_G0014251	pseudogene	ChrX:56650352-56652218 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0014878	pseudogene	ChrX:57621906-57622965 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012661	pseudogene	ChrX:56094958-56096014 (-)
CAST/EiJ	MGP_CASTEiJ_G0013886	pseudogene	ChrX:42405864-42406923 (-)
CBA/J	MGP_CBAJ_G0014234	pseudogene	ChrX:59313630-59314689 (-)
DBA/2J	MGP_DBA2J_G0014317	pseudogene	ChrX:55872315-55873374 (-)
FVB/NJ	MGP_FVBNJ_G0014311	pseudogene	ChrX:55411317-55412384 (-)
LP/J	MGP_LPJ_G0014410	pseudogene	ChrX:56683443-56684502 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014346	pseudogene	ChrX:60875672-60876731 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014855	pseudogene	ChrX:56149628-56150687 (-)
PWK/PhJ	MGP_PWKPhJ_G0013695	pseudogene	ChrX:40588831-40590114 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0013957	pseudogene	ChrX:55607198-55608257 (-)

Homology

• Gene Tree
  Gm8163
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000084331 (Evidence)
• NCBI Gene
  666559

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084331	Ensembl Gene Model | MGI Sequence Detail	1060	C57BL/6J
transcript	ENSMUST00000122020	Ensembl | MGI Sequence Detail	1060	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm8163:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr163493	ChrX:59771095-59771107 (-)	-47 bp