Gm5306 Pseudogene Detail

Summary

• Symbol
  Gm5306
• Name
  predicted gene 5306

• Feature Type
  pseudogene
• IDs
  MGI:3644732
  NCBI Gene: 384386
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:53754369-53755125 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 25.99 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  172 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644732	pseudogene	Chr6:53754349-53755168 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013466	pseudogene	Chr6:53105797-53106553 (+)
A/J	MGP_AJ_G0013450	pseudogene	Chr6:50635336-50636092 (+)
AKR/J	MGP_AKRJ_G0013415	pseudogene	Chr6:52365231-52365987 (+)
BALB/cJ	MGP_BALBcJ_G0013429	pseudogene	Chr6:50989019-50989775 (+)
C3H/HeJ	MGP_C3HHeJ_G0013279	pseudogene	Chr6:52383187-52383943 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013814	pseudogene	Chr6:54290331-54291087 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011896	pseudogene	Chr6:48250218-48250997 (+)
CAST/EiJ	MGP_CASTEiJ_G0012985	pseudogene	Chr6:52217578-52218341 (+)
CBA/J	MGP_CBAJ_G0013247	pseudogene	Chr6:56530551-56531307 (+)
DBA/2J	MGP_DBA2J_G0013331	pseudogene	Chr6:50538150-50538906 (+)
FVB/NJ	MGP_FVBNJ_G0013327	pseudogene	Chr6:50134411-50135167 (+)
LP/J	MGP_LPJ_G0013401	pseudogene	Chr6:53055896-53056652 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013347	pseudogene	Chr6:59092124-59092880 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013810	pseudogene	Chr6:52300515-52301271 (+)
PWK/PhJ	MGP_PWKPhJ_G0012795	pseudogene	Chr6:50184513-50185291 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012575	pseudogene	Chr6:51665428-51666206 (+)
WSB/EiJ	MGP_WSBEiJ_G0013030	pseudogene	Chr6:52320842-52321598 (+)

Homology

• Gene Tree
  Gm5306
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000107984 (Evidence)
• NCBI Gene
  384386

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107984	Ensembl Gene Model | MGI Sequence Detail	757	C57BL/6J
transcript	ENSMUST00000203325	Ensembl | MGI Sequence Detail	757	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;