Gm8741 Pseudogene Detail

Summary

• Symbol
  Gm8741
• Name
  predicted gene 8741

• Feature Type
  pseudogene
• IDs
  MGI:3644779
  NCBI Gene: 667636
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:35554885-35555268 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 18.63 cM
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644779	pseudogene	Chr17:35554829-35556029 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013683	pseudogene	Chr6:125371598-125371980 (+)
A/J	no annotation
AKR/J	MGP_AKRJ_G0014084	pseudogene	Chr9:46781911-46783104 (+)
BALB/cJ	MGP_BALBcJ_G0014110	pseudogene	Chr9:45544319-45545360 (+)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0009918	pseudogene	Chr14:11288774-11289158 (-)
CAST/EiJ	MGP_CASTEiJ_G0013180	pseudogene	Chr6:124143071-124143453 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0011229	pseudogene	Chr17:33494388-33495343 (+)
LP/J	MGP_LPJ_G0013624	pseudogene	Chr6:125523773-125524155 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0010760	pseudogene	Chr15:79131400-79131810 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011019	pseudogene	Chr2:70902919-70903305 (-)
WSB/EiJ	MGP_WSBEiJ_G0013236	pseudogene	Chr6:124153988-124154370 (+)

Homology

• Gene Tree
  Gm8741
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm8741
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15
• RefSeq
  1

• Ensembl
  ENSMUSG00000091655 (Evidence)
• NCBI Gene
  667636

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091655	Ensembl Gene Model | MGI Sequence Detail	384	C57BL/6J
transcript	ENSMUST00000174736	Ensembl | MGI Sequence Detail	384	Not Applicable

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:190754 Ermakova O, et al., Construction and phenotypic analysis of mice carrying a duplication of the major histocompatibility class I (MHC-I) locus. Mamm Genome. 2012 Aug;23(7-8):443-53

TSS for Gm8741:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr144355	Chr17:35554825-35554866 (+)	-39 bp