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Vmn1r39 Gene Detail
Summary
  • Symbol
    Vmn1r39
  • Name
    vomeronasal 1 receptor 39
  • Synonyms
    Gm5993
  • Feature Type
    protein coding gene
  • IDs
    MGI:3644802
    NCBI Gene: 546903
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr6:66781399-66782316 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 30.65 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    193 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3644802
 protein coding gene Chr6:66780281-66787593 (-)
129S1/SvImJ MGP_129S1SvImJ_G0030838
 protein coding gene Chr6:66719726-66769129 (-)
A/J MGP_AJ_G0030811
 protein coding gene Chr6:63916089-63917320 (-)
AKR/J MGP_AKRJ_G0030739
 protein coding gene Chr6:65887870-65889101 (-)
BALB/cJ MGP_BALBcJ_G0030822
 protein coding gene Chr6:64275272-64276503 (-)
C3H/HeJ MGP_C3HHeJ_G0030890
 protein coding gene Chr6:118247108-118248339 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031280
 protein coding gene Chr6:68368507-68369738 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0028468
 protein coding gene Chr6:61077895-61079097 (-)
CAST/EiJ MGP_CASTEiJ_G0029929
 protein coding gene Chr6:66206864-66208080 (-)
CBA/J MGP_CBAJ_G0030509
 protein coding gene Chr6:71197450-71198681 (-)
DBA/2J MGP_DBA2J_G0030661
 protein coding gene Chr6:63555996-63557227 (-)
FVB/NJ MGP_FVBNJ_G0030614
 protein coding gene Chr6:63067338-63068569 (-)
LP/J MGP_LPJ_G0030738
 protein coding gene Chr6:66638063-66710712 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0030649
 protein coding gene Chr6:74903772-74905003 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0031306
 protein coding gene Chr6:65813213-65814444 (-)
PWK/PhJ MGP_PWKPhJ_G0029643
 protein coding gene Chr6:62708363-62709572 (-)
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0030011
 protein coding gene Chr6:66146677-66147893 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 546903 NCBI Gene Model | MGI Sequence Detail 918 C57BL/6J ±  kb
transcript NM_001166720 RefSeq | MGI Sequence Detail 918 Not Specified  
polypeptide NP_001160192 RefSeq | MGI Sequence Detail 305 Not Specified  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR017452 GPCR, rhodopsin-like, 7TM
    IPR004072 Vomeronasal receptor, type 1
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
References
more
  • Summaries
    All 9
  • Earliest
    J:150929 Young J, et al., Extreme variability among mammalian V1R gene families. Genome Biol Evol. 2009;20(1):10-18
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory