Gm5540 Pseudogene Detail

Summary

• Symbol
  Gm5540
• Name
  predicted pseudogene 5540

• Feature Type
  pseudogene
• IDs
  MGI:3644824
  NCBI Gene: 433604
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:65300758-65302605 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 30.15 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  97 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644824	pseudogene	Chr3:65300742-65303708 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0012180	pseudogene	Chr3:62635653-62637943 (+)
AKR/J	MGP_AKRJ_G0012145	pseudogene	Chr3:63912353-63914474 (+)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0009685	pseudogene	Chr11:90286510-90327102 (-)
CAST/EiJ	MGP_CASTEiJ_G0010524	pseudogene	Chr11:96480050-96529897 (-)
CBA/J	MGP_CBAJ_G0012007	pseudogene	Chr3:69013040-69014853 (+)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0012069	pseudogene	Chr3:60778446-60781119 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0012072	pseudogene	Chr3:73619548-73621361 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012479	pseudogene	Chr3:63821310-63827069 (+)
PWK/PhJ	MGP_PWKPhJ_G0010413	pseudogene	Chr11:93304363-93352930 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0010230	pseudogene	Chr11:95569481-95628403 (-)
WSB/EiJ	MGP_WSBEiJ_G0010578	pseudogene	Chr11:95792054-95837399 (-)

Homology

• Gene Tree
  Gm5540
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm5540
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  2

• Ensembl
  ENSMUSG00000048916 (Evidence)
• NCBI Gene
  433604

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000048916	Ensembl Gene Model | MGI Sequence Detail	1848	C57BL/6J
transcript	ENSMUST00000131852	Ensembl | MGI Sequence Detail	1848	Not Applicable

References

• Summaries
  All 8

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426