Gm8172 Pseudogene Detail

Summary

• Symbol
  Gm8172
• Name
  predicted pseudogene 8172

• Feature Type
  pseudogene
• IDs
  MGI:3644930
  NCBI Gene: 666577
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:68649102-68649851 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 35.53 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  9

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644930	pseudogene	ChrX:68648500-68649892 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011836	pseudogene	Chr2:121922095-121922844 (+)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0012109	pseudogene	Chr2:125926323-125927067 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0011480	pseudogene	Chr2:121009509-121013619 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0011723	pseudogene	Chr2:115208525-115209218 (+)
LP/J	MGP_LPJ_G0011787	pseudogene	Chr2:122236067-122237146 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011727	pseudogene	Chr2:134721868-134722617 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012104	pseudogene	Chr2:120359086-120359750 (+)
PWK/PhJ	MGP_PWKPhJ_G0011327	pseudogene	Chr2:115943426-115944324 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm8172
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13
• RefSeq
  1

• Ensembl
  ENSMUSG00000082926 (Evidence)
• NCBI Gene
  666577

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082926	Ensembl Gene Model | MGI Sequence Detail	750	C57BL/6J
transcript	ENSMUST00000120762	Ensembl | MGI Sequence Detail	750	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm8172:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr163510	ChrX:68649893-68649899 (-)	-45 bp