Gm6644 Pseudogene Detail

Summary

• Symbol
  Gm6644
• Name
  predicted gene 6644

• Feature Type
  pseudogene
• IDs
  MGI:3644951
  NCBI Gene: 626009
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:55483233-55484183 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 28.16 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  112 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644951	pseudogene	Chr1:55482854-55484222 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014617	pseudogene	ChrX:90720580-90721527 (+)
A/J	MGP_AJ_G0014626	pseudogene	ChrX:90814485-90815432 (+)
AKR/J	MGP_AKRJ_G0014549	pseudogene	ChrX:93213308-93214255 (+)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0014411	pseudogene	ChrX:91086836-91087783 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015058	pseudogene	ChrX:93487698-93488555 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0014036	pseudogene	ChrX:75754284-75756086 (+)
CBA/J	MGP_CBAJ_G0014397	pseudogene	ChrX:96185129-96186076 (+)
DBA/2J	MGP_DBA2J_G0014479	pseudogene	ChrX:90037849-90038796 (+)
FVB/NJ	MGP_FVBNJ_G0014466	pseudogene	ChrX:89453633-89454580 (+)
LP/J	MGP_LPJ_G0014577	pseudogene	ChrX:91525452-91526399 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014505	pseudogene	ChrX:100496026-100496973 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015025	pseudogene	ChrX:90431822-90432764 (+)
PWK/PhJ	MGP_PWKPhJ_G0013842	pseudogene	ChrX:73527444-73528391 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013635	pseudogene	ChrX:76597283-76598230 (+)
WSB/EiJ	MGP_WSBEiJ_G0014114	pseudogene	ChrX:89229092-89230039 (+)

Homology

• Gene Tree
  Gm6644
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm6644
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000100309 (Evidence)
• NCBI Gene
  626009

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100309	Ensembl Gene Model | MGI Sequence Detail	951	C57BL/6J
transcript	ENSMUST00000186507	Ensembl | MGI Sequence Detail	951	Not Applicable

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45