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Phf11 Pseudogene Detail
Summary
  • Symbol
    Phf11
  • Name
    PHD finger protein 11
  • Synonyms
    Gm6904, Phf11-ps
  • Feature Type
    pseudogene
  • IDs
    MGI:3644962
    NCBI Gene: 628693
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:59482149-59497629 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 31.48 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    582 from dbSNP Build 142
  • Strain Annotations
    8
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3644962
 pseudogene Chr14:59476216-59497638 (-)
129S1/SvImJ MGP_129S1SvImJ_G0021421
 protein coding gene Chr14:53569605-53630602 (-)
A/J no annotation
AKR/J no annotation
BALB/cJ MGP_BALBcJ_G0021384
 protein coding gene Chr14:52346520-52374563 (-)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0021826
 protein coding gene Chr14:56183518-56205497 (-)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0021132
 protein coding gene Chr14:57766436-57782727 (-)
DBA/2J MGP_DBA2J_G0021254
 protein coding gene Chr14:52080860-52096979 (-)
FVB/NJ no annotation
LP/J MGP_LPJ_G0021329
 protein coding gene Chr14:54680097-54727861 (-)
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0021848
 protein coding gene Chr14:53522261-53590975 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    PHF11, PHD finger protein 11
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PHF11, PHD finger protein 11
  • Synonyms
    APY, BCAP, IGEL, IGER, IGHER, NY-REN-34, NYREN34
  • Links
    NCBI Gene ID: 51131
    neXtProt AC: NX_Q9UIL8
    UniProt: Q9UIL8

  • Chr Location
    13q14.2; chr13:49495610-49528981 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000090881 Ensembl Gene Model | MGI Sequence Detail 15481 C57BL/6J ±  kb
transcript ENSMUST00000224042 Ensembl | MGI Sequence Detail 603 Not Applicable  
For the selected sequence
Other
Accession IDs
less
MGI:6286506, MGI:6355963
References
more
  • Summaries
    All 9
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:217094 Zhang Y, et al., Functional analysis of a novel ENU-induced PHD finger 11 (Phf11) mouse mutant. Mamm Genome. 2014 Dec;25(11-12):573-82
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory