Gm6905 Pseudogene Detail

Summary

• Symbol
  Gm6905
• Name
  predicted gene 6905

• Feature Type
  pseudogene
• IDs
  MGI:3644964
  NCBI Gene: 628696
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:122609335-122609845 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 67.42 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  135 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644964	pseudogene	Chr7:122609318-122609883 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014002	pseudogene	Chr7:127129494-127130004 (+)
A/J	MGP_AJ_G0014021	pseudogene	Chr7:123831605-123832219 (+)
AKR/J	MGP_AKRJ_G0013955	pseudogene	Chr7:126989776-126990285 (+)
BALB/cJ	MGP_BALBcJ_G0013978	pseudogene	Chr7:123506622-123507132 (+)
C3H/HeJ	MGP_C3HHeJ_G0013813	pseudogene	Chr7:126877610-126879154 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014410	pseudogene	Chr7:132103886-132104396 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012266	pseudogene	Chr7:125127541-125128074 (+)
CAST/EiJ	MGP_CASTEiJ_G0013468	pseudogene	Chr7:118701768-118702277 (+)
CBA/J	MGP_CBAJ_G0013793	pseudogene	Chr7:136544099-136544609 (+)
DBA/2J	MGP_DBA2J_G0013870	pseudogene	Chr7:121820466-121820976 (+)
FVB/NJ	MGP_FVBNJ_G0013871	pseudogene	Chr7:121674901-121675410 (+)
LP/J	MGP_LPJ_G0013949	pseudogene	Chr7:128576501-128577011 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013897	pseudogene	Chr7:137904246-137904755 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014376	pseudogene	Chr7:125985930-125986439 (+)
PWK/PhJ	MGP_PWKPhJ_G0013283	pseudogene	Chr7:114758561-114759177 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013052	pseudogene	Chr7:112761503-112763066 (+)
WSB/EiJ	MGP_WSBEiJ_G0013531	pseudogene	Chr7:126896945-126897454 (+)

Homology

• Gene Tree
  Gm6905
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000108396 (Evidence)
• NCBI Gene
  628696

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108396	Ensembl Gene Model | MGI Sequence Detail	511	C57BL/6J
transcript	ENSMUST00000205729	Ensembl | MGI Sequence Detail	511	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm6905:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr68927	Chr7:122609313-122609330 (+)	-13 bp