Gm9320 Pseudogene Detail

Summary

• Symbol
  Gm9320
• Name
  predicted gene 9320
• Synonyms
  C230073G13Rik

• Feature Type
  pseudogene
• IDs
  MGI:3645000
  NCBI Gene: 668724
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:71182835-71183307 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 41.87 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  146 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645000	pseudogene	Chr17:71182804-71183308 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039681	pseudogene	Chr17:73289695-73292267 (+)
A/J	MGP_AJ_G0039680	pseudogene	Chr17:71057695-71058204 (+)
AKR/J	MGP_AKRJ_G0039606	pseudogene	Chr17:72029250-72029813 (+)
BALB/cJ	MGP_BALBcJ_G0039651	pseudogene	Chr17:70980621-70981436 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0040211	pseudogene	Chr17:75949805-75950291 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0038433	pseudogene	Chr17:73414428-73415033 (+)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0039478	pseudogene	Chr17:69742985-69743420 (+)
FVB/NJ	MGP_FVBNJ_G0039434	pseudogene	Chr17:69212218-69212617 (+)
LP/J	MGP_LPJ_G0039493	pseudogene	Chr10:118554013-118555230 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039438	pseudogene	Chr17:79014982-79016685 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040312	pseudogene	Chr17:72550129-72550601 (+)
PWK/PhJ	MGP_PWKPhJ_G0038109	pseudogene	Chr17:69046394-69052722 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm9320
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000100865 (Evidence)
• NCBI Gene
  668724

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100865	Ensembl Gene Model | MGI Sequence Detail	473	C57BL/6J
transcript	ENSMUST00000184151	Ensembl | MGI Sequence Detail	473	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:2444005

References

• Summaries
  All 11

  Phenotypes 2
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm9320:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr145702	Chr17:71182804-71182807 (+)	-29 bp