Gm6342 Pseudogene Detail

Summary

• Symbol
  Gm6342
• Name
  predicted gene 6342

• Feature Type
  pseudogene
• IDs
  MGI:3645065
  NCBI Gene: 622683
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:83821421-83822107 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 36.00 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  95 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645065	pseudogene	Chr6:83821312-83822107 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013576	pseudogene	Chr6:84885293-84886058 (-)
A/J	MGP_AJ_G0013556	pseudogene	Chr6:81650405-81651170 (-)
AKR/J	MGP_AKRJ_G0013518	pseudogene	Chr6:84012302-84013067 (-)
BALB/cJ	MGP_BALBcJ_G0013536	pseudogene	Chr6:81679753-81680518 (-)
C3H/HeJ	MGP_C3HHeJ_G0013399	pseudogene	Chr6:100396275-100397040 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013924	pseudogene	Chr6:87229803-87230568 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011965	pseudogene	Chr6:80015840-80016606 (-)
CAST/EiJ	MGP_CASTEiJ_G0013080	pseudogene	Chr6:84037657-84038406 (-)
CBA/J	MGP_CBAJ_G0013356	pseudogene	Chr6:90656527-90657292 (-)
DBA/2J	MGP_DBA2J_G0013436	pseudogene	Chr6:80963770-80964535 (-)
FVB/NJ	MGP_FVBNJ_G0013436	pseudogene	Chr6:80176099-80176864 (-)
LP/J	MGP_LPJ_G0013512	pseudogene	Chr6:84888348-84889109 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013448	pseudogene	Chr6:94913300-94914065 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013915	pseudogene	Chr6:83840716-83841480 (-)
PWK/PhJ	MGP_PWKPhJ_G0012886	pseudogene	Chr6:79876929-79877693 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012666	pseudogene	Chr6:82664943-82665707 (-)
WSB/EiJ	MGP_WSBEiJ_G0013128	pseudogene	Chr6:84263805-84264570 (-)

Homology

• Gene Tree
  Gm6342
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm6342
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000107644 (Evidence)
• NCBI Gene
  622683

Representative Sequences			Length	Strain/Species
genomic	622683	NCBI Gene Model | MGI Sequence Detail	687	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48

TSS for Gm6342:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr61715	Chr6:83822099-83822109 (-)	3 bp