Gm6473 Pseudogene Detail

Summary

• Symbol
  Gm6473
• Name
  predicted gene 6473

• Feature Type
  pseudogene
• IDs
  MGI:3645176
  NCBI Gene: 624138
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:30808768-30810896 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 11.45 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  198 from dbSNP Build 142
• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645176	pseudogene	Chr1:30808768-30811418 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0015876	pseudogene	Chr1:28283604-28285408 (+)
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0040432	pseudogene	Chr1:30304270-30306594 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037486	pseudogene	Chr8:114393803-114399146 (+)
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0015737	pseudogene	Chr1:27727130-27729703 (+)
FVB/NJ	MGP_FVBNJ_G0039645	pseudogene	Chr1:27292032-27295790 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0039638	pseudogene	Chr1:33209371-33213092 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040530	pseudogene	Chr1:28567100-28569679 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm6473
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm6473
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13
• RefSeq
  2

• Ensembl
  ENSMUSG00000100261 (Evidence)
• NCBI Gene
  624138

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100261	Ensembl Gene Model | MGI Sequence Detail	2129	C57BL/6J
transcript	ENSMUST00000188572	Ensembl | MGI Sequence Detail	1210	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;