Gm5418 Pseudogene Detail

Summary

• Symbol
  Gm5418
• Name
  predicted gene 5418

• Feature Type
  pseudogene
• IDs
  MGI:3645206
  NCBI Gene: 414361
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:17352424-17352951 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 9.15 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  170 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645206	pseudogene	Chr7:17352424-17353261 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0013825	pseudogene	Chr7:15126711-15127238 (+)
AKR/J	MGP_AKRJ_G0013773	pseudogene	Chr7:15481163-15481693 (+)
BALB/cJ	MGP_BALBcJ_G0013808	pseudogene	Chr7:15354956-15355483 (+)
C3H/HeJ	MGP_C3HHeJ_G0013630	pseudogene	Chr7:15805689-15806207 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014203	pseudogene	Chr7:16231454-16231981 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013033	pseudogene	ChrX:149660837-149661440 (-)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0013611	pseudogene	Chr7:16776386-16776904 (+)
DBA/2J	MGP_DBA2J_G0013688	pseudogene	Chr7:15036901-15037428 (+)
FVB/NJ	MGP_FVBNJ_G0013684	pseudogene	Chr7:14996408-14996935 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0013703	pseudogene	Chr7:16680141-16680668 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014181	pseudogene	Chr7:15260066-15260593 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0012897	pseudogene	Chr7:10132115-10132639 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm5418
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000108792 (Evidence)
• NCBI Gene
  414361

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108792	Ensembl Gene Model | MGI Sequence Detail	528	C57BL/6J
transcript	ENSMUST00000206932	Ensembl | MGI Sequence Detail	528	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;