Gm5843 Pseudogene Detail

Summary

• Symbol
  Gm5843
• Name
  predicted gene 5843

• Feature Type
  pseudogene
• IDs
  MGI:3645250
  NCBI Gene: 545507
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:14787475-14794078 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 3.16 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  326 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645250	pseudogene	Chr3:14787475-14794686 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040288	pseudogene	Chr3:11908983-11917019 (-)
A/J	MGP_AJ_G0040267	pseudogene	Chr3:11825845-11835484 (+)
AKR/J	MGP_AKRJ_G0040204	pseudogene	Chr3:11850131-11867246 (-)
BALB/cJ	MGP_BALBcJ_G0040269	pseudogene	Chr3:11632751-11636698 (-)
C3H/HeJ	MGP_C3HHeJ_G0039904	pseudogene	Chr3:12178965-12187000 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0040860	pseudogene	Chr3:12709711-12720243 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037288	pseudogene	Chr3:10135620-10147095 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0039870	pseudogene	Chr3:12915427-12925631 (-)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0040024	pseudogene	Chr3:11214372-11230997 (+)
LP/J	MGP_LPJ_G0040116	pseudogene	Chr3:12489748-12520744 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0040020	pseudogene	Chr3:14673188-14695826 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040959	pseudogene	Chr3:11619537-11630749 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0038376	pseudogene	Chr3:11715381-11719891 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm5843
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000084092 (Evidence)
• NCBI Gene
  545507

Representative Sequences			Length	Strain/Species
genomic	545507	NCBI Gene Model | MGI Sequence Detail	6604	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;