Ccdc196 Gene Detail

Summary

• Symbol
  Ccdc196
• Name
  coiled-coil domain containing 196
• Synonyms
  Gm6657

• Feature Type
  protein coding gene
• IDs
  MGI:3645257
  NCBI Gene: 626215
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr12:78241016-78255803 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 35.51 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  467 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645257	protein coding gene	Chr12:78241016-78260938 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005368	lincRNA gene	Chr12:78437103-78448949 (+)
A/J	MGP_AJ_G0005351	lincRNA gene	Chr12:75395490-75408753 (+)
AKR/J	MGP_AKRJ_G0005331	lincRNA gene	Chr12:77689891-77703130 (+)
BALB/cJ	MGP_BALBcJ_G0005333	lincRNA gene	Chr12:75868173-75880421 (+)
C3H/HeJ	MGP_C3HHeJ_G0005282	lincRNA gene	Chr12:78142997-78154858 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005487	lincRNA gene	Chr12:80773502-80785362 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004874	lincRNA gene	Chr12:72695385-72706796 (+)
CAST/EiJ	MGP_CASTEiJ_G0005229	lincRNA gene	Chr12:72970473-72983524 (+)
CBA/J	MGP_CBAJ_G0005271	lincRNA gene	Chr12:83882002-83896321 (+)
DBA/2J	MGP_DBA2J_G0005289	lincRNA gene	Chr12:75261269-75273151 (+)
FVB/NJ	MGP_FVBNJ_G0005314	lincRNA gene	Chr12:74078916-74090746 (+)
LP/J	MGP_LPJ_G0005370	lincRNA gene	Chr12:78372599-78384774 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005296	lincRNA gene	Chr12:86863373-86875260 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005489	lincRNA gene	Chr12:77194270-77206127 (+)
PWK/PhJ	MGP_PWKPhJ_G0005178	lincRNA gene	Chr12:69609752-69621875 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005098	lincRNA gene	Chr12:71669496-71685871 (+)
WSB/EiJ	MGP_WSBEiJ_G0005277	lincRNA gene	Chr12:77786140-77799285 (+)

Homology

• Human Ortholog
  CCDC196, coiled-coil domain containing 196

• Vertebrate Orthologs
  2

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  CCDC196, coiled-coil domain containing 196
  
• Synonyms
  C14orf53, LINC00238, NCRNA00238
• Links
  HGNC:20100

  NCBI Gene ID: 440184

  UniProt: A0A1B0GTZ2

  
  
• Chr Location
  14q23.3; chr14:66411704-66498677 (+)  GRCh38

---

• MGI Vertebrate Homology
  Ccdc196 stringent orthology
  1 human;1 mouse;1 rat
  
• HCOP
  vertebrate homology predictions: CCDC196
• Gene Tree
  Ccdc196
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Ccdc196
• Find Mice (IMSR)
  7 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  10
• UniProt
  3

• Ensembl
  ENSMUSG00000099418 (Evidence)
• NCBI Gene
  626215

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099418	Ensembl Gene Model | MGI Sequence Detail	14788	C57BL/6J
transcript	ENSMUST00000211288	Ensembl | MGI Sequence Detail	1091	Not Applicable
polypeptide	ENSMUSP00000147546	Ensembl | MGI Sequence Detail	277	Not Applicable

Protein
Information

• UniProt
  3 Sequences

Other
Accession IDs

MGI:7516370

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Ccdc196:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr114034	Chr12:78240999-78241012 (+)	-10 bp
Tssr114035	Chr12:78243824-78243835 (+)	2,814 bp
Tssr114036	Chr12:78243846-78243860 (+)	2,837 bp