Ap3m1-ps Pseudogene Detail

Summary

• Symbol
  Ap3m1-ps
• Name
  adaptor-related protein complex 3, mu 1 subunit, pseudogene
• Synonyms
  D10Ertd567e, EG544716

• Feature Type
  pseudogene
• IDs
  MGI:3645307
  NCBI Gene: 544716
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:82421260-82422517 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 39.72 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  107 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645307	pseudogene	Chr10:82421216-82423372 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036402	pseudogene	Chr14:13836192-13846176 (-)
A/J	MGP_AJ_G0036386	pseudogene	Chr14:13493732-13503721 (-)
AKR/J	MGP_AKRJ_G0036337	pseudogene	Chr14:14028068-14038059 (-)
BALB/cJ	MGP_BALBcJ_G0036379	pseudogene	Chr14:13597027-13607012 (-)
C3H/HeJ	MGP_C3HHeJ_G0036073	pseudogene	Chr14:13967711-13977702 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0036888	pseudogene	Chr14:14315616-14326107 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034002	pseudogene	Chr14:13801322-13811613 (-)
CAST/EiJ	MGP_CASTEiJ_G0035270	pseudogene	Chr14:13750038-13762545 (-)
CBA/J	MGP_CBAJ_G0036045	pseudogene	Chr14:15050961-15060957 (-)
DBA/2J	MGP_DBA2J_G0036218	pseudogene	Chr14:13319615-13329607 (-)
FVB/NJ	MGP_FVBNJ_G0036172	pseudogene	Chr14:13208719-13218704 (-)
LP/J	MGP_LPJ_G0036271	pseudogene	Chr14:14049980-14059976 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036175	pseudogene	Chr14:14814838-14824859 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0036997	pseudogene	Chr14:13818942-13828931 (-)
PWK/PhJ	MGP_PWKPhJ_G0034969	pseudogene	Chr14:12895561-12907289 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0034786	pseudogene	Chr14:13613215-13623208 (-)
WSB/EiJ	MGP_WSBEiJ_G0035460	pseudogene	Chr14:13804283-13814369 (-)

Homology

• Gene Tree
  Ap3m1-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Ap3m1-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000094683 (Evidence)
• NCBI Gene
  544716

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000094683	Ensembl Gene Model | MGI Sequence Detail	1258	C57BL/6J
transcript	ENSMUST00000177652	Ensembl | MGI Sequence Detail	1258	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 1

  Primer pair 1

Other
Accession IDs

MGI:1261914

References

• Summaries
  All 12

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Ap3m1-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr94818	Chr10:82421224-82421240 (+)	-28 bp