H1f11-ps Pseudogene Detail

Summary

• Symbol
  H1f11-ps
• Name
  H1.11 linker histone, pseudogene
• Synonyms
  Gm6970

• Feature Type
  pseudogene
• IDs
  MGI:3645322
  NCBI Gene: 629389
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:47158908-47159573 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 39.39 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  136 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645322	pseudogene	Chr19:47158865-47159639 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0025227	protein coding gene	Chr19:46954414-46955079 (-)
A/J	MGP_AJ_G0025203	protein coding gene	Chr19:44606485-44607150 (-)
AKR/J	MGP_AKRJ_G0025172	protein coding gene	Chr19:46068189-46068854 (-)
BALB/cJ	MGP_BALBcJ_G0025198	protein coding gene	Chr19:44664592-44665257 (-)
C3H/HeJ	MGP_C3HHeJ_G0024958	protein coding gene	Chr19:46251141-46251806 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0025641	protein coding gene	Chr19:48082241-48082906 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0023054	protein coding gene	Chr19:43852280-43852924 (-)
CAST/EiJ	MGP_CASTEiJ_G0024423	protein coding gene	Chr19:46060754-46061411 (-)
CBA/J	MGP_CBAJ_G0024938	protein coding gene	Chr19:50517504-50518169 (-)
DBA/2J	MGP_DBA2J_G0025070	protein coding gene	Chr19:44421352-44422017 (-)
FVB/NJ	MGP_FVBNJ_G0025031	protein coding gene	Chr19:44217376-44218041 (-)
LP/J	MGP_LPJ_G0025156	protein coding gene	Chr19:46846939-46847604 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0025062	protein coding gene	Chr19:49806560-49807225 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0025699	protein coding gene	Chr19:46190647-46191312 (-)
PWK/PhJ	MGP_PWKPhJ_G0024172	protein coding gene	Chr19:44386845-44387510 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0023975	protein coding gene	Chr19:44841854-44842519 (-)
WSB/EiJ	MGP_WSBEiJ_G0024493	protein coding gene	Chr19:46344051-46344716 (-)

Homology

• Gene Tree
  H1f11-ps
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  6 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000091230 (Evidence)
• NCBI Gene
  629389

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091230	Ensembl Gene Model | MGI Sequence Detail	666	C57BL/6J
transcript	ENSMUST00000169692	Ensembl | MGI Sequence Detail	666	Not Applicable

Other
Accession IDs

MGI:6331234

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for H1f11-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr159707	Chr19:47159638-47159642 (-)	-67 bp