Gm5866 Pseudogene Detail

Summary

• Symbol
  Gm5866
• Name
  predicted gene 5866

• Feature Type
  pseudogene
• IDs
  MGI:3645339
  NCBI Gene: 545750
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:52739416-52740388 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 28.33 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  165 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645339	pseudogene	Chr5:52739377-52740431 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011433	pseudogene	Chr18:35089776-35091605 (+)
A/J	MGP_AJ_G0011427	pseudogene	Chr18:33853131-33854113 (+)
AKR/J	MGP_AKRJ_G0011391	pseudogene	Chr18:34799010-34799992 (+)
BALB/cJ	MGP_BALBcJ_G0011406	pseudogene	Chr18:33905234-33906204 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0011699	pseudogene	Chr18:36320939-36321909 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012630	pseudogene	Chr5:50622143-50623995 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0011328	pseudogene	Chr18:33182171-33183141 (+)
LP/J	MGP_LPJ_G0011393	pseudogene	Chr18:35120440-35121897 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011320	pseudogene	Chr18:38612997-38613967 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011684	pseudogene	Chr18:34674530-34675512 (+)
PWK/PhJ	MGP_PWKPhJ_G0012448	pseudogene	Chr5:48888651-48890879 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm5866
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm5866
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15

• Ensembl
  ENSMUSG00000095078 (Evidence)
• NCBI Gene
  545750

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000095078	Ensembl Gene Model | MGI Sequence Detail	973	C57BL/6J
transcript	ENSMUST00000177881	Ensembl | MGI Sequence Detail	973	Not Applicable

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm5866:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46179	Chr5:52738694-52738709 (+)	-714 bp