Gm5745 Pseudogene Detail

Summary

• Symbol
  Gm5745
• Name
  predicted gene 5745

• Feature Type
  pseudogene
• IDs
  MGI:3645343
  NCBI Gene: 436081
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:73082711-73083023 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 40.22 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  140 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645343	pseudogene	Chr9:73082681-73083068 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012835	pseudogene	Chr4:117776668-117776980 (-)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0013137	pseudogene	Chr4:122313609-122313921 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011395	pseudogene	Chr4:107287352-107287664 (-)
CAST/EiJ	MGP_CASTEiJ_G0012407	pseudogene	Chr4:114499050-114499362 (-)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0014030	pseudogene	Chr9:69852624-69852936 (-)
LP/J	MGP_LPJ_G0014114	pseudogene	Chr9:73611026-73611338 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014060	pseudogene	Chr9:79018756-79019068 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013148	pseudogene	Chr4:116851270-116851582 (-)
PWK/PhJ	MGP_PWKPhJ_G0012227	pseudogene	Chr4:110659386-110659822 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012036	pseudogene	Chr4:113129627-113129939 (-)
WSB/EiJ	MGP_WSBEiJ_G0013681	pseudogene	Chr9:72615748-72616060 (-)

Homology

• Gene Tree
  Gm5745
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm5745
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1

• Ensembl
  ENSMUSG00000066478 (Evidence)
• NCBI Gene
  436081

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000066478	Ensembl Gene Model | MGI Sequence Detail	313	C57BL/6J
transcript	ENSMUST00000183748	Ensembl | MGI Sequence Detail	313	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;