Rpl27a-ps1 Pseudogene Detail

Summary

• Symbol
  Rpl27a-ps1
• Name
  ribosomal protein L27A, pseudogene 1
• Synonyms
  Gm4923

• Feature Type
  pseudogene
• IDs
  MGI:3645354
  NCBI Gene: 237361
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:61145609-61146056 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 32.19 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  100 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645354	pseudogene	Chr10:61145585-61146098 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010524	pseudogene	Chr10:60631799-60632245 (+)
A/J	MGP_AJ_G0010516	pseudogene	Chr10:58825200-58825750 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0010489	pseudogene	Chr10:58901377-58901823 (+)
C3H/HeJ	MGP_C3HHeJ_G0009954	pseudogene	Chr1:28862035-28862481 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010761	pseudogene	Chr10:62800072-62800518 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0010238	pseudogene	Chr10:60252873-60253319 (+)
CBA/J	MGP_CBAJ_G0010383	pseudogene	Chr10:65147354-65147800 (+)
DBA/2J	MGP_DBA2J_G0010417	pseudogene	Chr10:58099418-58099864 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0010504	pseudogene	Chr10:61043176-61043804 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010403	pseudogene	Chr10:67476994-67477440 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010731	pseudogene	Chr10:60176770-60177216 (+)
PWK/PhJ	MGP_PWKPhJ_G0010137	pseudogene	Chr10:57934049-57934720 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0010304	pseudogene	Chr10:60100977-60101370 (+)

Homology

• Gene Tree
  Rpl27a-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Rpl27a-ps1
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000061488 (Evidence)
• NCBI Gene
  237361

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000061488	Ensembl Gene Model | MGI Sequence Detail	448	C57BL/6J
transcript	ENSMUST00000075382	Ensembl | MGI Sequence Detail	448	Not Applicable

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Rpl27a-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93662	Chr10:61145581-61145587 (+)	-25 bp