Gm9341 Pseudogene Detail

Summary

• Symbol
  Gm9341
• Name
  predicted gene 9341

• Feature Type
  pseudogene
• IDs
  MGI:3645378
  NCBI Gene: 668764
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:135554527-135555512 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 81.49 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  149 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645378	pseudogene	Chr7:135554514-135555713 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014026	pseudogene	Chr7:140829680-140830665 (+)
A/J	MGP_AJ_G0014043	pseudogene	Chr7:136886198-136887183 (+)
AKR/J	MGP_AKRJ_G0013977	pseudogene	Chr7:140569418-140570403 (+)
BALB/cJ	MGP_BALBcJ_G0014001	pseudogene	Chr7:136639214-136640199 (+)
C3H/HeJ	MGP_C3HHeJ_G0013835	pseudogene	Chr7:140430960-140431945 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014435	pseudogene	Chr7:146146903-146147888 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012290	pseudogene	Chr7:138116106-138117060 (+)
CAST/EiJ	MGP_CASTEiJ_G0013493	pseudogene	Chr7:132550568-132551553 (+)
CBA/J	MGP_CBAJ_G0013816	pseudogene	Chr7:151033304-151034289 (+)
DBA/2J	MGP_DBA2J_G0013894	pseudogene	Chr7:134895479-134896464 (+)
FVB/NJ	MGP_FVBNJ_G0013894	pseudogene	Chr7:134746790-134747775 (+)
LP/J	MGP_LPJ_G0013975	pseudogene	Chr7:142368487-142369472 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013921	pseudogene	Chr7:151888563-151889548 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014403	pseudogene	Chr7:139602378-139603363 (+)
PWK/PhJ	MGP_PWKPhJ_G0013307	pseudogene	Chr7:127973378-127974363 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013079	pseudogene	Chr7:126360555-126361539 (+)
WSB/EiJ	MGP_WSBEiJ_G0013552	pseudogene	Chr7:140460366-140461351 (+)

Homology

• Gene Tree
  Gm9341
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000098031 (Evidence)
• NCBI Gene
  668764

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098031	Ensembl Gene Model | MGI Sequence Detail	986	C57BL/6J
transcript	ENSMUST00000183000	Ensembl | MGI Sequence Detail	986	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm9341:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr69666	Chr7:135554459-135554466 (+)	-64 bp