Slc25a5-ps Pseudogene Detail

Summary

• Symbol
  Slc25a5-ps
• Name
  Slc25a5 retrotransposed pseudogene
• Synonyms
  Gm8429

• Feature Type
  pseudogene
• IDs
  MGI:3645403
  NCBI Gene: 667030
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:11289155-11289980 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 6.33 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  126 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645403	pseudogene	Chr14:11288885-11290143 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011071	pseudogene	Chr14:3533012-3533835 (+)
A/J	MGP_AJ_G0011069	pseudogene	Chr14:3485076-3485901 (+)
AKR/J	MGP_AKRJ_G0011026	pseudogene	Chr14:3529386-3530211 (+)
BALB/cJ	MGP_BALBcJ_G0011048	pseudogene	Chr14:3475858-3476683 (+)
C3H/HeJ	MGP_C3HHeJ_G0010944	pseudogene	Chr14:3564845-3566896 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011325	pseudogene	Chr14:3668297-3669122 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009916	pseudogene	Chr14:4250755-4251574 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0010916	pseudogene	Chr14:3779983-3780806 (+)
DBA/2J	MGP_DBA2J_G0010963	pseudogene	Chr14:3429312-3430135 (+)
FVB/NJ	MGP_FVBNJ_G0010974	pseudogene	Chr14:3401026-3401851 (+)
LP/J	MGP_LPJ_G0011051	pseudogene	Chr14:3482456-3483279 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010958	pseudogene	Chr14:3869017-3869842 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011306	pseudogene	Chr14:3482831-3483656 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0010815	pseudogene	Chr14:3537975-3538800 (+)

Homology

• Gene Tree
  Slc25a5-ps
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000089785 (Evidence)
• NCBI Gene
  667030

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089785	Ensembl Gene Model | MGI Sequence Detail	826	C57BL/6J
transcript	ENSMUST00000162199	Ensembl | MGI Sequence Detail	826	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;