Gm5777 Pseudogene Detail

Summary

• Symbol
  Gm5777
• Name
  predicted gene 5777

• Feature Type
  pseudogene
• IDs
  MGI:3645433
  NCBI Gene: 544698
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:57658450-57658897 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 29.25 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  133 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645433	pseudogene	Chr10:57658382-57659099 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010520	pseudogene	Chr10:57159821-57160268 (+)
A/J	MGP_AJ_G0010514	pseudogene	Chr10:55492172-55492619 (+)
AKR/J	MGP_AKRJ_G0010477	pseudogene	Chr10:56651860-56652307 (+)
BALB/cJ	MGP_BALBcJ_G0010487	pseudogene	Chr10:55602518-55602965 (+)
C3H/HeJ	MGP_C3HHeJ_G0010415	pseudogene	Chr10:56880493-56880940 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010759	pseudogene	Chr10:58940510-58940957 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009427	pseudogene	Chr10:52330764-52331211 (+)
CAST/EiJ	MGP_CASTEiJ_G0010233	pseudogene	Chr10:56823979-56824426 (+)
CBA/J	MGP_CBAJ_G0010381	pseudogene	Chr10:61410237-61410684 (+)
DBA/2J	MGP_DBA2J_G0010414	pseudogene	Chr10:54833028-54833475 (+)
FVB/NJ	MGP_FVBNJ_G0010433	pseudogene	Chr10:54075398-54075845 (+)
LP/J	MGP_LPJ_G0010502	pseudogene	Chr10:57260460-57260907 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010401	pseudogene	Chr10:63623807-63624254 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010728	pseudogene	Chr10:56470818-56471265 (+)
PWK/PhJ	MGP_PWKPhJ_G0010134	pseudogene	Chr10:54617164-54617611 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009948	pseudogene	Chr10:56129595-56130042 (+)
WSB/EiJ	MGP_WSBEiJ_G0010301	pseudogene	Chr10:56670316-56670763 (+)

Homology

• Gene Tree
  Gm5777
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm5777
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000093552 (Evidence)
• NCBI Gene
  544698

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093552	Ensembl Gene Model | MGI Sequence Detail	448	C57BL/6J
transcript	ENSMUST00000177265	Ensembl | MGI Sequence Detail	448	Not Applicable

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm5777:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93399	Chr10:57658377-57658390 (+)	-66 bp