Gm4735 Pseudogene Detail

Summary

• Symbol
  Gm4735
• Name
  predicted gene 4735
• Synonyms
  Gm13699

• Feature Type
  pseudogene
• IDs
  MGI:3645521
  NCBI Gene: 103324
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:80667485-80668786 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 48.66 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  77 from dbSNP Build 142
• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645521	pseudogene	Chr2:80667439-80669117 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012414	pseudogene	Chr3:133694105-133695405 (-)
A/J	MGP_AJ_G0012409	pseudogene	Chr3:128994752-128996052 (-)
AKR/J	MGP_AKRJ_G0012373	pseudogene	Chr3:132349273-132350573 (-)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0012254	pseudogene	Chr3:132756444-132757744 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0012232	pseudogene	Chr3:143060255-143061555 (-)
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0012360	pseudogene	Chr3:135171538-135173364 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012296	pseudogene	Chr3:151011510-151013146 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm4735
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  3 involving Gm4735
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  12
• RefSeq
  1

• Ensembl
  ENSMUSG00000064193 (Evidence)
• NCBI Gene
  103324

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000064193	Ensembl Gene Model | MGI Sequence Detail	1302	C57BL/6J
transcript	ENSMUST00000138679	Ensembl | MGI Sequence Detail	1302	Not Applicable

Other
Accession IDs

MGI:3651585

References

• Summaries
  All 11

  Phenotypes 5
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for Gm4735:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18631	Chr2:80667427-80667438 (+)	-52 bp