Cyp21a2-ps Pseudogene Detail

Summary

• Symbol
  Cyp21a2-ps
• Name
  cytochrome P450, family 21, subfamily a, polypeptide 2 pseudogene
• Synonyms
  21OHB, Cyp21a2ps, Cyp21B, Cyp21-ps1, EG632302, Oh21-2

• Feature Type
  pseudogene
• IDs
  MGI:3645529
  NCBI Gene: 632302
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:34938787-34941226 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 18.29 cM
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  1 from dbSNP Build 142
• Strain Annotations
  12
• RFLP
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645529	pseudogene	Chr17:34938405-34941253 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0040160	pseudogene	Chr17:34905622-34908182 (-)
A/J	MGP_AJ_G0040150	pseudogene	Chr17:33663187-33766074 (-)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0040136	pseudogene	Chr17:33775360-33903507 (-)
C3H/HeJ	MGP_C3HHeJ_G0039782	pseudogene	Chr17:34456880-34462194 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0040726	pseudogene	Chr17:36125018-36147630 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037194	pseudogene	Chr17:31517893-31520427 (-)
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0039944	pseudogene	Chr17:32929682-32932408 (-)
FVB/NJ	MGP_FVBNJ_G0039907	pseudogene	Chr17:32825277-32915797 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0039896	pseudogene	Chr17:36610444-36613080 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040825	pseudogene	Chr17:34358665-34361291 (-)
PWK/PhJ	MGP_PWKPhJ_G0038564	pseudogene	Chr17:31858088-31861329 (-)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Cyp21a2-ps
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  2

• Ensembl
  ENSMUSG00000092471 (Evidence)
• NCBI Gene
  632302

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092471	Ensembl Gene Model | MGI Sequence Detail	2440	C57BL/6J
transcript	ENSMUST00000172970	Ensembl | MGI Sequence Detail	1383	Not Applicable

Molecular
Reagents

• All nucleic 10

  Genomic 7

  cDNA 1

  Other 2

Other
Accession IDs

MGD-MRK-1001, MGD-MRK-13022, MGD-MRK-2306, MGD-MRK-2308, MGD-MRK-2309, MGI:88592

References

• Summaries
  All 20
• Earliest
  J:7260 Chaplin DD, et al., Molecular map of the murine S region. Proc Natl Acad Sci U S A. 1983 Nov;80(22):6947-51
• Latest
  J:109470 Riepe FG, et al., Congenital adrenal hyperplasia: the molecular basis of 21-hydroxylase deficiency in H-2(aw18) mice. Endocrinology. 2005 Jun;146(6):2563-74

TSS for Cyp21a2-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr147633	Chr17:34941382-34941395 (-)	-163 bp
Tssr5096	Chr17:34941356-34941363 (-)	-134 bp