Fam236f Gene Detail

Summary

• Symbol
  Fam236f
• Name
  family with sequence similarity 236, member F
• Synonyms
  Gm9112

• Feature Type
  protein coding gene
• IDs
  MGI:3645559
  NCBI Gene: 668339
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:101750496-101751241 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 45.66 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  4 from dbSNP Build 142
• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645559	protein coding gene	ChrX:101750494-101751276 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0035950	protein coding gene	ChrX:98256267-98257006 (+)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0034943	protein coding gene	ChrX:84254628-84255374 (+)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0035781	protein coding gene	ChrX:98464663-98465408 (-)
FVB/NJ	MGP_FVBNJ_G0035726	protein coding gene	ChrX:98042198-98042943 (+)
LP/J	MGP_LPJ_G0035878	protein coding gene	ChrX:100491798-100492537 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0034469	protein coding gene	ChrX:84982508-84983255 (+)
WSB/EiJ	MGP_WSBEiJ_G0035083	protein coding gene	ChrX:97897075-97897822 (+)

Homology

• Human Ortholog
  FAM236A, family with sequence similarity 236 member A

• Vertebrate Orthologs
  4

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  FAM236A, family with sequence similarity 236 member A
  
• Synonyms
  DMRTC1-AS1, LINC00684
• Links
  HGNC:44268

  NCBI Gene ID: 100129407

  neXtProt AC: NX_A0A1B0GUQ0, NX_A0A1B0GV22

  UniProt: A0A1B0GUQ0

  
  
• Chr Location
  Xq13.1; chrX:72938163-72938958 (+)  GRCh38

---

• Human Ortholog
  FAM236B, family with sequence similarity 236 member B
  
• Links
  HGNC:52640

  NCBI Gene ID: 100132304

  neXtProt AC: NX_A0A1B0GUQ0, NX_A0A1B0GV22

  UniProt: A0A1B0GV22

  
  
• Chr Location
  Xq13.1; chrX:72781865-72782660 (-)  GRCh38

---

• Human Ortholog
  FAM236C, family with sequence similarity 236 member C
  
• Synonyms
  FAM236D
• Links
  HGNC:52641

  NCBI Gene ID: 109729126

  UniProt: P0DP71

  
  
• Chr Location
  Xq13.1; chrX:72912615-72913401 (+)  GRCh38

---

• Human Ortholog
  FAM236D, family with sequence similarity 236 member D
  
• Synonyms
  FAM236C
• Links
  HGNC:52642

  NCBI Gene ID: 105373251

  neXtProt AC: NX_A0A1B0GTK5, NX_P0DP71

  UniProt: A0A1B0GTK5

  
  
• Chr Location
  chrX:72807425-72808210 (-)  GRCh38

---

• MGI Vertebrate Homology
  Fam236f stringent orthology
  4 human;1 mouse
  
• HCOP
  vertebrate homology predictions: FAM236A, FAM236B, FAM236C, FAM236D
• Gene Tree
  Fam236f
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS53157.1

• Ensembl
  ENSMUSG00000079479 (Evidence)
• NCBI Gene
  668339

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000079479	Ensembl Gene Model | MGI Sequence Detail	746	C57BL/6J
transcript	ENSMUST00000113610	Ensembl | MGI Sequence Detail	420	Not Applicable
polypeptide	ENSMUSP00000109240	Ensembl | MGI Sequence Detail	75	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 13

  Phenotypes 2
• Earliest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42