Gm9397 Pseudogene Detail

Summary

• Symbol
  Gm9397
• Name
  predicted gene 9397

• Feature Type
  pseudogene
• IDs
  MGI:3645564
  NCBI Gene: 668845
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:129934029-129935691 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 59.93 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  141 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645564	pseudogene	Chr3:129934025-129938907 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012410	pseudogene	Chr3:132862209-132862801 (+)
A/J	MGP_AJ_G0012405	pseudogene	Chr3:128212829-128216499 (+)
AKR/J	MGP_AKRJ_G0012369	pseudogene	Chr3:131538439-131539031 (+)
BALB/cJ	MGP_BALBcJ_G0012388	pseudogene	Chr3:128064363-128064955 (+)
C3H/HeJ	MGP_C3HHeJ_G0012250	pseudogene	Chr3:131938708-131939300 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012702	pseudogene	Chr3:137586190-137588555 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011066	pseudogene	Chr3:123743105-123743711 (+)
CAST/EiJ	MGP_CASTEiJ_G0012019	pseudogene	Chr3:131635687-131636281 (+)
CBA/J	MGP_CBAJ_G0012228	pseudogene	Chr3:142214098-142214871 (+)
DBA/2J	MGP_DBA2J_G0012286	pseudogene	Chr3:127407543-127408135 (+)
FVB/NJ	MGP_FVBNJ_G0012288	pseudogene	Chr3:124999051-124999643 (+)
LP/J	MGP_LPJ_G0012356	pseudogene	Chr3:134356707-134357299 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012292	pseudogene	Chr3:150175849-150176441 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012705	pseudogene	Chr3:131202105-131202697 (+)
PWK/PhJ	MGP_PWKPhJ_G0011858	pseudogene	Chr3:127146031-127146625 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011676	pseudogene	Chr3:129274801-129275399 (+)
WSB/EiJ	MGP_WSBEiJ_G0012046	pseudogene	Chr3:131931537-131932129 (+)

Homology

• Gene Tree
  Gm9397
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm9397
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000106276 (Evidence)
• NCBI Gene
  668845

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106276	Ensembl Gene Model | MGI Sequence Detail	1663	C57BL/6J
transcript	ENSMUST00000200125	Ensembl | MGI Sequence Detail	605	Not Applicable

References

• Summaries
  All 8

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426