Gm8420 Pseudogene Detail

Summary

• Symbol
  Gm8420
• Name
  predicted gene 8420

• Feature Type
  pseudogene
• IDs
  MGI:3645594
  NCBI Gene: 667014
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:51979823-51980420 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 26.59 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  184 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645594	pseudogene	Chr1:51979823-51980458 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010131	pseudogene	Chr1:51441664-51442353 (-)
A/J	MGP_AJ_G0010119	pseudogene	Chr1:49719736-49720333 (-)
AKR/J	MGP_AKRJ_G0010098	pseudogene	Chr1:50766886-50767482 (-)
BALB/cJ	MGP_BALBcJ_G0010107	pseudogene	Chr1:49533356-49534039 (-)
C3H/HeJ	MGP_C3HHeJ_G0010036	pseudogene	Chr1:51166217-51168188 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010356	pseudogene	Chr1:53617814-53618411 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009099	pseudogene	Chr1:42133202-42133797 (+)
CAST/EiJ	MGP_CASTEiJ_G0009870	pseudogene	Chr1:50646288-50647248 (-)
CBA/J	MGP_CBAJ_G0010006	pseudogene	Chr1:55040486-55041661 (-)
DBA/2J	MGP_DBA2J_G0010033	pseudogene	Chr1:48974432-48975029 (-)
FVB/NJ	MGP_FVBNJ_G0010056	pseudogene	Chr1:48438786-48439383 (-)
LP/J	MGP_LPJ_G0010122	pseudogene	Chr1:51923814-51924411 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010016	pseudogene	Chr1:58067768-58070716 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0009774	pseudogene	Chr1:48851701-48852500 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0009590	pseudogene	Chr1:50551377-50551983 (-)
WSB/EiJ	MGP_WSBEiJ_G0009935	pseudogene	Chr1:50711258-50712616 (-)

Homology

• Gene Tree
  Gm8420
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm8420
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000072324 (Evidence)
• NCBI Gene
  667014

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000072324	Ensembl Gene Model | MGI Sequence Detail	598	C57BL/6J
transcript	ENSMUST00000097103	Ensembl | MGI Sequence Detail	598	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm8420:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11588	Chr1:51980448-51980461 (-)	-35 bp